>retro_taes_171
CCCGTCTGCTACGCCTGGTGCGATCCTTCCCCGCAAATGCATGTAACCCAGGGGATCTCGATGGCGATCAACGTCAACAA
GATGATCGAAGTGGGCTGCCAAGTCAAAATTCTGATGGCGGATTGGTTAGCTCGGATGGATCATCACATCGGTGGCAAGG
TCGGTGGCGATCTGAGTAAGGTACGTGATGTTGGCCTGTACAACATTGAGATGTGGAGAGCGGCCGGCATGGATCTCGAC
AGGGTCGAGCTCGTGTGGCTGTCGGAGCAAATAAGCCGCCACGTGGACGAGTTCTGGCCGCTTGTCATGGATGTTGGCAG
AAAAAGCGACACGAAAAGAATAAAAAAGTCGCTCTGCGTTCATCGCACGGATGATACGAGGGGCCATGGGAGCTTAGATC
CCTACTTGTTTAGGGATTTCACTCCTGCCGAGATATTCCATCCTTGCTTGCAGTGTGCCGGCATAGTGCTG
ORF - retro_taes_171 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
59.12 % |
Parental protein coverage: |
51.13 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | PVCYVWCDPSPWMHITQGISMTSNVNKMVKAGFEVKLLMADWFARMDPQITMKVGSDLSNIQTIGRYNIE |
| PVCY.WCDPSP.MH.TQGISM..NVNKM...G..VK.LMADW.ARMD..I..KVG.DLS.....G.YNIE |
Retrocopy | PVCYAWCDPSPQMHVTQGISMAINVNKMIEVGCQVKILMADWLARMDHHIGGKVGGDLSKVRDVGLYNIE |
|
Parental | VWKAIGMNLGGVEVVQLSDKISCKTDEYWSLAMDIARKSDLSRIKSWLRVYASKDPSMRCQGSIDPYMSR |
| .W.A.GM.L..VE.V.LS..IS...DE.W.L.MD..RKSD..RIK..L.V....D...R..GS.DPY..R |
Retrocopy | MWRAAGMDLDRVELVWLSEQISRHVDEFWPLVMDVGRKSDTKRIKKSLCVHRTDD--TRGHGSLDPYLFR |
|
Parental | EFSAAEIANPCLQSAGILL |
| .F..AEI..PCLQ.AGI.L |
Retrocopy | DFTPAEIFHPCLQCAGIVL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Triticum aestivum was not studied using RNA-Seq expression data.
Triticum aestivum was not studied using ChIP-Seq data.
Triticum aestivum was not studied using EST data.
Triticum aestivum was not studied using FANTOM5 data.
retro_taes_171 was not experimentally validated.
Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.