RetrogeneDB ID: retro_taes_177

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_2BL_scaff_8001441:8414..9374(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_2BL_6552196A1
• Aliases: None
• Description: None

Sequence

>retro_taes_177
CTGGTCGGCGGCGCCGCTTACGACGCCCACGGCCACCCGCTGCCCGACGCTACGCTCAAACTCGCCAAGGATTCCGACGC
CATCCTGTTCGGTGCCGTTGGCGACTGGAAGTACGACACGCTGGACCGCCCGCTGCGGCCCGAGCAAGCCATCCTGGGCC
TGCGCAAGAATCTGGGCCTGTTCGCCAACTTCCGCCCGGCCATCTGTTACCCGCAACTGGTGGACGCCTCCAGCCTGAAG
CGCGAGTTAGTGTCCGGGCTGGACATCCTGATCATTCGCGAACTGACCGGCGACATCTACTTCGGCCAACCGCGCGGCCG
CCGTATTTCGCCCGATGGTCACTTTCCCGGCGCCGAGGAAGCCTTCGACACCATGCGTTATTCGCGCCCGGAAATCGAAC
GTATCGCTCACGTCGCCTTCCAAGCCGCCCGCAAGCGCAGCAGCCGCGTCACCAGCGTTGACAAGGCCAACGTGCTGGAG
ACCTTCCAGCTCTGGAAAGATGTGCTGACCGAAATCGGCAAGGAATATCCCGACGTGGCGCTGGACCACATGTATGTGGA
CAACGCCGCCATGCAGCTGGTCAAGGCGCCCAAGAAGTTCGACGTGGTGGTGACAGGCAACATGTTCGGTGACATCCTGT
CCGACGCCGCCGCCATGCTGACCGGCTCGATCGGCATGTTGCCCTCGGCCAGCCTGAACACAAAGAGCCAGGGCCTGTAC
GAACCCAGCCACGGCAGCGCACCCGACATCGCCGGTAAGGGCGTGGCCAATCCGCTGGCAACGATTTTGAGCGCGGCCAT
GATGCTGCGTTTCAGCCTGAACCAGCCGGAAGCTGCGGTGCGTATCGAAAAAGCCGTGGACGCGGTTTTGACGCAGGGCC
TGCGCACGCCGGACATCTATAGCGACGGCACGACCAAGGTTGGTACCGTCGAGATGGGCAACGCAGTGGTCAAAGCTCTG

Alignment

ORF - retro_taes_177 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.69 %
• Parental protein coverage: 98.44 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LMGGAALDAAGVPLPDETLAAARASDAILLGAIGGYKWDNNEKHLKPETGLLNIRAGLGVFANLRPATVL
          L.GGAA.DA.G.PLPD.TL..A..SDAIL.GA.G..K.D.....L.PE...L..R..LG.FAN.RPA...
Retrocopy LVGGAAYDAHGHPLPDATLKLAKDSDAILFGAVGDWKYDTLDRPLRPEQAILGLRKNLGLFANFRPAICY

Parental  PQLVDASTLKKEVAEGVDIMVVRELTGGIYFGKPRGFGTNDKGE----ETGFNTEIYSVAEIDRIARVAF
          PQLVDAS.LK.E...G.DI...RELTG.IYFG.PRG......G.....E..F.T..YS..EI.RIA.VAF
Retrocopy PQLVDASSLKRELVSGLDILIIRELTGDIYFGQPRGRRISPDGHFPGAEEAFDTMRYSRPEIERIAHVAF

Parental  EVARKRGGKLCSVDKANVLEASMLWRKRVTAIASEFPDVELSHMYVDNAAMQLVRNPKQFDTIVTNNIFG
          ..ARKR.....SVDKANVLE...LW....T.I..E.PDV.L.HMYVDNAAMQLV..PK.FD..VT.N.FG
Retrocopy QAARKRSSRVTSVDKANVLETFQLWKDVLTEIGKEYPDVALDHMYVDNAAMQLVKAPKKFDVVVTGNMFG

Parental  DILSDEASMITGSIGMLPSASVGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGVESAAK
          DILSD.A.M.TGSIGMLPSAS......GL.EP.HGSAPDIAG...ANPLATILSAAM.L...L....AA.
Retrocopy DILSDAAAMLTGSIGMLPSASLNTKSQGLYEPSHGSAPDIAGKGVANPLATILSAAMMLRFSLNQPEAAV

Parental  RIEAAVTETLDNGFRTGDIYSPGTTLVGCKQMGEEVLKAL
          RIE.AV...L..G.RT.DIYS.GTT.VG...MG..V.KAL
Retrocopy RIEKAVDAVLTQGLRTPDIYSDGTTKVGTVEMGNAVVKAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_177 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_2BL_6552196A1	1 retrocopy	retro_taes_177 ,