RetrogeneDB ID: | retro_taes_179 | ||
Retrocopy location | Organism: | Wheat (Triticum aestivum) | |
| Coordinates: | IWGSC_CSS_2BL_scaff_8022176:3528..3936(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | Traes_4DL_B0BD66142 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_taes_179
GTCGGCTTCATCAAGCTGCAAGTGCCAGCTGGTAAGGCCAACCCGTCCCCCCCGATTGGCCCGGCTTTGGGTCAGCGCGG
CTTGAACATCATGGAGTTCTGCAAGGCATTTAATGCCCAGACCCAGGGTGTCGAGCCGGGTCTGCCGCTTCCCGTGGTGA
TCACGGCATTTGCCGACAAGAGCTTTACCTTTGTCATCAAGACGCCTCCCGCAGGTGTGCTGATCAAAAAGGCCATCAAG
CTCGACAAGGGTTCTGCGACACCGCACACGGTGAAAGTTGGCAAGATCTCCCGCGCACAGCTTGAAGAAATTGCCAAGAC
CAAAATGAAAGACATGACGGCTGCTGACCTCGACGCTGCAGTTCGCACGATTGCTGGTACGGCCCGCTCCATGGGCGTGT
CGGTGGAG
ORF - retro_taes_179 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 51.47 % |
| Parental protein coverage: | 63.98 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | VGIIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNAKTAD-KPGYIIPVEITVFDDKSFTFILKTPP |
| VG.IKL...AGKA.P....GPALG..G.NIM.FCK..NA.T....PG...PV.IT.F.DKSFTF..KTPP | |
| Retrocopy | VGFIKLQVPAGKANPXXXIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPLPVVITAFADKSFTFVIKTPP |
| Parental | ASVLLLKAAGVEKGSKEPQREKVGKVTVDQVRTIAQEKLPDLNCKTIESAMRIIAGTAANMGIDVD |
| A.VL..KA....KGS..P...KVGK....Q...IA..K..D........A.R.IAGTA..MG..V. | |
| Retrocopy | AGVLIKKAIKLDKGSATPHTVKVGKISRAQLEEIAKTKMKDMTAADLDAAVRTIAGTARSMGVSVE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Triticum aestivum was not studied using RNA-Seq expression data.
Triticum aestivum was not studied using ChIP-Seq data.
Triticum aestivum was not studied using EST data.
Triticum aestivum was not studied using FANTOM5 data.
retro_taes_179 was not experimentally validated.
Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Triticum aestivum | Traes_4DL_B0BD66142 | 1 retrocopy |
retro_taes_179 ,
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