RetrogeneDB ID: retro_taes_32

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 3B:750664453..750665893(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: TRAES3BF052700140CFD_g
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_7AS_7D66EF3D3
• Aliases: None
• Description: None

Sequence

>retro_taes_32
ATGGCTCTCACCAGAATTGGTCTCGCTGGCCTCGCGGTCATGGGCCAGAACCTTGCCCTCAACATTGCCGAGAAAGGCTT
CCCCATCTCTGTCTACAACAGGACAACGTCCAAGGTCGATGAGACTGTTCAGCGTGCCAAGCTAGAAGGAAACCTTCCTC
TCTATGGTTTCCATGACCCTGCATCCTTTGTCAACTCCATTCAGAAGCCACGTGTCGTCATCATGCTTGTCAAGGCTGGT
GCTCCGGTCGACCAGACCATCGCAACGCTCGCAGCACACCTGGAGCAAGGTGACTGCATCGTTGACGGAGGAAACGAGTG
GTATGAGAACACAGAAAGGAGGGAGAAGGCCATGGAGGAGCGTGGACTCCTCTACTTAGGGATGGGTGTCTCCGGAGGAG
AGGAGGGTGCCCGCCATGGCCCCTCCATGATGCCTGGAGGCTCACTGGAGGCTTACCAGTACATTGAAGACATTCTTCTC
AAGGTGTCTGCTCAAGTCCCTGACAGCGGTCCGTGTGTCACATACATTGGGAAGGGTGGATCTGGAAACTTTGTCAAGAT
GGTTCACAATGGTATCGAGTACGGTGACATGCAGCTGATCGCTGAGGCATATGATGTTCTCAAGTCGGTTGGTAAGCTCA
CAAACGGTGAGCTGCAGCAGGTTTTCGCCGAGTGGAACAAGGGTGAGCTCCTCAGTTTCTTGGTCGAGATCACTGCTGAT
ATATTCAGCATCAAGGATGACCAGGGTGAAGGCTACTTGGTCGACAAGGTCCTGGACAAGACTGGGATGAAGGGAACCGG
CAAGTGGACAGTGCAGCAGGCTGCTGAGCTCTCAGTGGCTGCTCCTACCATTGAGGCGTCCTTGGATTCCAGGTTCCTCA
GCGGGTTGAAGGACGAGAGGGTGGCTGCTTCCAAGATCTTCCAAGGTGACTACAGCAGCGGCGAAACTGTGGACAAGGCG
CAGCTCATCGAGGATGTGAGGAAAGCTCTGTATGCCTCCAAGATCTGCAGCTATGCCCAGGGCATGAACATCATCAAGGC
CAAGAGCGTGGAGAAGGGATGGGGCCTGAACCTGGGCGAGCTGGCCAGGATCTGGAAGGGCGGGTGCATCATCCGCGCCA
GCTTCCTGGACCGCATCAAGAAGGCGTACGACAGGAACGGCGAGCTCGCGAACCTCCTCATCGACCCCGAGTTTGCGCAG
GAGATCATGGACAGGCAGGCCGCATGGAGGAGGGTCGTGTGCCTCGCCATCAACAACGGCGTGAGCACCCCCGGCATGTC
GGCGAGCCTGGCCTACTTTGACTCGTACAGGAGGGAGAGGCTTCCCGCGAACCTCGTGCAGGCCCAGAGGGATTACTTTG
GGGCGCACACCTACGAGAGGGTCGACATGCCGGGATCCTTCCACACCGAGTGGTACAAGATCGCCAACTCGAAGATCTAA

Alignment

ORF - retro_taes_32 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.58 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MALTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKLEGNLPLYGFHDPASFVNSIQKP
          MALTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKLEGNLPLYGFHDPASFVNSIQKP
Retrocopy MALTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKLEGNLPLYGFHDPASFVNSIQKP

Parental  RVVIMLVKAGAPVDQTIATLAAHLEQGDCIVDGGNEWYENTERREKAMEERGLLYLGMGVSGGEEGARHG
          RVVIMLVKAGAPVDQTIATLAAHLEQGDCIVDGGNEWYENTERREKAMEERGLLYLGMGVSGGEEGARHG
Retrocopy RVVIMLVKAGAPVDQTIATLAAHLEQGDCIVDGGNEWYENTERREKAMEERGLLYLGMGVSGGEEGARHG

Parental  PSMMPGGSLEAYQYIEDILLKVSAQVPDSGPCVTYIGKGGSGNFVKMVHNGIEYGDMQLIAEAYDVLKSV
          PSMMPGGSLEAYQYIEDILLKVSAQVPDSGPCVTYIGKGGSGNFVKMVHNGIEYGDMQLIAEAYDVLKSV
Retrocopy PSMMPGGSLEAYQYIEDILLKVSAQVPDSGPCVTYIGKGGSGNFVKMVHNGIEYGDMQLIAEAYDVLKSV

Parental  GKLTNGELQQVFAEWNKGELLSFLVEITADIFSIKDDQGEGYLVDKVLDKTGMKGTGKWTVQQAAELSVA
          GKLTNGELQQVFAEWNKGELLSFLVEITADIFSIKDDQGEGYLVDKVLDKTGMKGTGKWTVQQAAELSVA
Retrocopy GKLTNGELQQVFAEWNKGELLSFLVEITADIFSIKDDQGEGYLVDKVLDKTGMKGTGKWTVQQAAELSVA

Parental  APTIEASLDSRFLSGLKDERVAASKIFQGDYSSGETVDKAQLIEDVRKALYASKICSYAQGMNIIKAKST
          APTIEASLDSRFLSGLKDERVAASKIFQGDYSSGETVDKAQLIEDVRKALYASKICSYAQGMNIIKAKS.
Retrocopy APTIEASLDSRFLSGLKDERVAASKIFQGDYSSGETVDKAQLIEDVRKALYASKICSYAQGMNIIKAKSV

Parental  EKGWGLNLGELARIWKGGCIIRASFLDRIKKAYDRNGELANLLIDPEFAQEIMDRQAAWRRVVCLAINNG
          EKGWGLNLGELARIWKGGCIIRASFLDRIKKAYDRNGELANLLIDPEFAQEIMDRQAAWRRVVCLAINNG
Retrocopy EKGWGLNLGELARIWKGGCIIRASFLDRIKKAYDRNGELANLLIDPEFAQEIMDRQAAWRRVVCLAINNG

Parental  VSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWYKIANSKI
          VSTPGMSASLAYFDSYRR.RLPANLVQAQRDYFGAHTYERVDMPGSFHTEWYKIANSKI
Retrocopy VSTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERVDMPGSFHTEWYKIANSKI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_32 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_7AS_7D66EF3D3	1 retrocopy	retro_taes_32 ,