RetrogeneDB ID: | retro_taes_66 | ||
Retrocopy location | Organism: | Wheat (Triticum aestivum) | |
| Coordinates: | 5B:207214525..207216223(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | Traes_5BL_EE25CD53E | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | Traes_1BS_9E2358A6E | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_taes_66
ATGGACAGCTTGCCGAAGCGCGACGCCAACCACGTGCCGCTGAGCCCGGTCACCTTCCTGCCACGGGCAGCGGCCGTGTA
CGCCGACCGCACCTCCGTCGTCTGCGGTGGCACCGCCTTCACCTGGCGCCAGACGCACCACCGCTGCGTCCGCCTGTCCG
CTGCGCTGCAGGCGCTCGGCGTCGCCAGGAACGACGTCGTCTCCGTGCTCGCGCCCAACACCCCCGCGCTATACGAGATG
CACTTCGCGGTGCCCATGGCTGGGGGCGTGATCAACGCCATCAACACCCGCCTCGACGCCGCCGGCGTCGCCGCCATTCT
TCGCCACGCCGCCCCCAAGCTCATGTTCGTCGACTACCAGTACATCCGTGTCGCCACCGACGCGTTCAAGGGTGTCGCCT
CGTCGTCCCTGCCGCTGCTGGTGGTCATCGACGACATCGACGCGCCTACGGGGGCGCGTGTTGGGGAGCTGGAGTACGAG
GGCCTGGTTGCGCGCGGCGACCCGGCCAGGCACCCGCCGCGCGAGGTGGTGGACGAGTGGGACGCCGTCGCGCTCAACTA
CACCTCCGGCACCACGTCGGCTCCCAAGGGCGTCGTGTACAGCCATCGGGGCGCCTACCTCAGCACGGTCGGGCTGCTGC
TGCAGTGGGGCGTGGGCCACGAGCCGGTCTACCTCTGGTCGCTCCCCATGTTCCACTGCAACGGCTGGACCTTCACGTGG
GGCGTGGCAGCGCGTGGTGGCGCCAACGTCTGCGTCCGCGCGCCGACGGCGGACGCCATGTACTCCGCCATCGTCGACCA
CGGCGTCACTCACATGTGCGTCGCGCCCGTGCTCTTCAACGTCCTCCTCGACGCCCACCGTGACCCGCTGCCCCGCGCCG
TCGAGGTGCTCACGGGCGGCGCGCCGCCTCCCGCCGCGCTGCTCGAGCGCGTCGAGCGCCTCGGGTTCCATGTCACGCAC
GCCTACGGCATGACCGAAGCGACCGGCCCGGCCATGGTCTGCGAGTGGCGGGAGCGGTGGGACGCGCTGCCAGCGCCGGA
GCGTGCTGCGCTCAAGGCGCGGCAGGGCGTGAGCGCGATCTCCCTCGCCGGGGCCGACGTCAAGAACCTCAAGACCATGG
CGAGCGTGCCCCGGGACGGCACCACGCTCGGCGAGATCGTGCTGCGCGGGAGCAGCGTGATGAAGGGGTACTACAAGAAC
CCGGAGGCCACGGACGCGGCGTTCCGCGACGGGTGGTTCCTGACGGGCGACGTGGGCGTGGTGCACCCGGATGGGTACGT
GGAGATCAAGGACCGGTCCAAGGACGTGATCATCTCCGGCGGCGAGAACATCAGCAGCGTGGAGGTGGAGGCGGCGCTGT
ACGGCCACCCGGCGGTGCAGGAGGCGGCGGTGGTCGCCATGCCGCACCCACACTGGGGCGAGACGCCGTGCGCCTTCGTC
GCGCTGAAGAAGGAGTTCGACTCCGGCGCCGGCGAGGTGAGCGAGGAGGAGCTGGTGGCCTTCTGCCGGAGTAAGATAGC
GCACTTCATGGTGCCGAGGAAGGTGGTGTTCGTCCACGAGCTGCCCAAGAACGCCACGGGCAAGGTGCAGAAGCTCGCGC
TGCGCGAGAGGGCGCGCGGGCTCAGGCCCAGAGATTCCGACAAGAAGAAGCCCGACCCCACCCGGCCCGCCACGATGACC
GCATTGTCCAGACTTTGA
ORF - retro_taes_66 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 75.55 % |
| Parental protein coverage: | 96.28 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MDSLPKRDANYVPLSPITFLQRAASVYADRTSLVYGNTIFTWRQTYERCCRLAAALQQLGVMKKDVVSVL |
| MDSLPKRDAN.VPLSP.TFL.RAA.VYADRTS.V.G.T.FTWRQT..RC.RL.AALQ.LGV...DVVSVL | |
| Retrocopy | MDSLPKRDANHVPLSPVTFLPRAAAVYADRTSVVCGGTAFTWRQTHHRCVRLSAALQALGVARNDVVSVL |
| Parental | APNTPALYEMHFAVPMAGAVLNAINTRLDATAAAGIIKHADPKLLFVDYQYMCLATESLRDGEAAGSISP |
| APNTPALYEMHFAVPMAG.V.NAINTRLDA...A.I..HA.PKL.FVDYQY...AT.....G.A..S..P | |
| Retrocopy | APNTPALYEMHFAVPMAGGVINAINTRLDAAGVAAILRHAAPKLMFVDYQYIRVATDAFK-GVASSSL-P |
| Parental | LLVVIDDLNKPEETRIGELHYEQLVERGDPEQRPPRSVDDEWDAITLNYTSGTTSSALKGVVYSHRGAYL |
| LLVVIDD...P...R.GEL.YE.LV.RGDP...PPR.V.DEWDA..LNYTSGTTS.A.KGVVYSHRGAYL | |
| Retrocopy | LLVVIDDIDAPTGARVGELEYEGLVARGDPARHPPREVVDEWDAVALNYTSGTTS-APKGVVYSHRGAYL |
| Parental | STVGLLLQWGVGSEPVYLWSLPMFHCNGWTLTWGVAARGGVNVCIRTPAADDMYAALSAHGVTHMCGAPV |
| STVGLLLQWGVG.EPVYLWSLPMFHCNGWT.TWGVAARGG.NVC.R.P.AD.MY.A...HGVTHMC.APV | |
| Retrocopy | STVGLLLQWGVGHEPVYLWSLPMFHCNGWTFTWGVAARGGANVCVRAPTADAMYSAIVDHGVTHMCVAPV |
| Parental | LLNILVEARREPLLHAVEVLTGGAPPPAALLERVERLGFNVTHAYGMTEATGSAMVCEWRERWNALPTST |
| L.N.L..A.R.PL..AVEVLTGGAPPPAALLERVERLGF.VTHAYGMTEATG.AMVCEWRERW.ALP... | |
| Retrocopy | LFNVLLDAHRDPLPRAVEVLTGGAPPPAALLERVERLGFHVTHAYGMTEATGPAMVCEWRERWDALPAPE |
| Parental | RARLKARQGVSALSLADAAVVNNIDTMQSVPRDGTALGEIMLRGNSIMKEYYKDTAATASAFRGGWFLTG |
| RA.LKARQGVSA.SLA..A.V.N..TM.SVPRDGT.LGEI.LRG.S.MK.YYK...AT..AFR.GWFLTG | |
| Retrocopy | RAALKARQGVSAISLA-GADVKNLKTMASVPRDGTTLGEIVLRGSSVMKGYYKNPEATDAAFRDGWFLTG |
| Parental | DVGVVHPDGYVEIKDRSKDVIISGGENISSVDVEMALYQHHAVREAAVVAMPHPHWGETPCAFVALEPGF |
| DVGVVHPDGYVEIKDRSKDVIISGGENISSV.VE.ALY.H.AV.EAAVVAMPHPHWGETPCAFVAL...F | |
| Retrocopy | DVGVVHPDGYVEIKDRSKDVIISGGENISSVEVEAALYGHPAVQEAAVVAMPHPHWGETPCAFVALKKEF |
| Parental | -SCLGEVTEEDIILFCRDKMPHFMVPRKVVFVDKLPTNSTGKVRKIELRQRLHG |
| .S..GEV.EE....FCR.K..HFMVPRKVVFV..LP.N.TGKV.K..LR.R..G | |
| Retrocopy | DSGAGEVSEEELVAFCRSKIAHFMVPRKVVFVHELPKNATGKVQKLALRERARG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Triticum aestivum was not studied using RNA-Seq expression data.
Triticum aestivum was not studied using ChIP-Seq data.
Triticum aestivum was not studied using EST data.
Triticum aestivum was not studied using FANTOM5 data.
retro_taes_66 was not experimentally validated.
Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Triticum aestivum | Traes_1BS_9E2358A6E | 1 retrocopy |
retro_taes_66 ,
|