RetrogeneDB ID: retro_tbel_2258

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_107530:13771..14479(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CCNG2
• Ensembl ID: ENSTBEG00000007671
• Aliases: None
• Description: cyclin G2 [Source:HGNC Symbol;Acc:1593]

Sequence

>retro_tbel_2258
AACTTTTTTGGATCTTGCACTGAAACCTTTGTCCTGGCTGTCAATATTTTGGACAGATTTTTGGCTCTTATGAAGGTGAA
ACCTAAACATTTATCTTGCATTGGAGTCTGTTGTTTTTTGCTGGCTGCTCGAATTGTTGAAGAAAAATGCAATATTCCGT
CTACTTACGATGTAATTCGGATTAGTCAATGTAAATGTACTGCTTCTGACATAAAACGGATGGAAAAAATAATTTCAGAA
AAATTGCACTATGAATTGGAAGCTACTACTGCCTTAAACTTTTTGCACTTGTATCATACTGTTATGCTTTGTCACACTTC
AGAAAGGAAAGATATTTTAAGCCTTGATAAACTAGAAGCTCAGCTGAAAGCTTGCAACTGCCGACTTACCTTTTCAAAAG
CAAAACCATCGGTACTAGCTCTGTGCCTTCTCAGTTTGGAAGTAGAAACTTTGAAATCCGTTGAATTACTGGAAATTTTC
CTGCTTGTTAAAAAACATTCCAAGATTAATGACACGGAATTCTTTTATTGGAGAGAGTTAGTTTCTACATGCCTAGCTGA
ATATTCTTCTCCTGAATGTTGCAAACCAGATCTTAAGAAGTTGGTTTGGATTGTTTCAAGGCGCACAGTCCAGAACCTCC
ACAACAGCAACTATAGTGTTCCTGAACTGCCAACAATATCAGAGCAGGGTTGTTTTGATGAAAGTGAA

Alignment

ORF - retro_tbel_2258 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.03 %
• Parental protein coverage: 77.89 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCCFLLAARIVEEECNIPSTYDVIRISQCKCTASD
          NFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCCFLLAARIVEE.CNIPSTYDVIRISQCKCTASD
Retrocopy NFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCCFLLAARIVEEKCNIPSTYDVIRISQCKCTASD

Parental  IKRMEKIISEKLHYELEATTALNFLHLYHTIMLCHTSERKDILSLDKLEAQLKACNCRLTFSKAKPSVLA
          IKRMEKIISEKLHYELEATTALNFLHLYHT.MLCHTSERKDILSLDKLEAQLKACNCRLTFSKAKPSVLA
Retrocopy IKRMEKIISEKLHYELEATTALNFLHLYHTVMLCHTSERKDILSLDKLEAQLKACNCRLTFSKAKPSVLA

Parental  LCLLNLEVETLKSVELLEILLLVKKHSKINDTEFFYWRELVSTCLAEYSSPECCKPDLKKLVWIVSRRTA
          LCLL.LEVETLKSVELLEI.LLVKKHSKINDTEFFYWRELVSTCLAEYSSPECCKPDLKKLVWIVSRRT.
Retrocopy LCLLSLEVETLKSVELLEIFLLVKKHSKINDTEFFYWRELVSTCLAEYSSPECCKPDLKKLVWIVSRRTV

Parental  QNLHNSYYSVPELPTIPEQGCFDESE
          QNLHNS.YSVPELPTI.EQGCFDESE
Retrocopy QNLHNSNYSVPELPTISEQGCFDESE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_2258 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_2258 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 13 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013793	1 retrocopy	retro_amel_960,
Dasypus novemcinctus	ENSDNOG00000005210	1 retrocopy	retro_dnov_2498,
Felis catus	ENSFCAG00000026008	1 retrocopy	retro_fcat_1062,
Macropus eugenii	ENSMEUG00000008707	1 retrocopy	retro_meug_1962,
Macaca mulatta	ENSMMUG00000000914	1 retrocopy	retro_mmul_879,
Monodelphis domestica	ENSMODG00000011779	1 retrocopy	retro_mdom_358,
Nomascus leucogenys	ENSNLEG00000008169	1 retrocopy	retro_nleu_933,
Pongo abelii	ENSPPYG00000014867	1 retrocopy	retro_pabe_942,
Pan troglodytes	ENSPTRG00000016196	1 retrocopy	retro_ptro_773,
Sus scrofa	ENSSSCG00000008988	1 retrocopy	retro_sscr_813,
Ictidomys tridecemlineatus	ENSSTOG00000027922	1 retrocopy	retro_itri_1112,
Tupaia belangeri	ENSTBEG00000007671	2 retrocopies	retro_tbel_2258 , retro_tbel_38,
Tursiops truncatus	ENSTTRG00000014837	1 retrocopy	retro_ttru_491,