RetrogeneDB ID: retro_tbel_2689

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_116669:338746..339205(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM206A
• Ensembl ID: ENSTBEG00000004984
• Aliases: None
• Description: family with sequence similarity 206, member A [Source:HGNC Symbol;Acc:1364]

Sequence

>retro_tbel_2689
GTCAAAGGAAAACCCTGCGAGGACCACGGTATACTACAGCACTCCAACAGAATATGTGTCATCACATTGGCAGAATCTCA
CCCAGCTCTTCAAAGTGGAAAGAGAATTAAAAGCATTTCTTATCAGATCAGTACTAATTGTAGCAGACTTCAGAACAAGG
TCTCTGGGAAATTTAAACGGGGAGCACAGTTTCTAACAGAATTGGCACCTCTGTGTAAGATTTCCTGCTCAGATGGAGAA
GAATATACCATATCTAGCTGTGTTAGAGGACGGTTGATAGAAGTGAATGAAAATATTCTTCATAAGCCATCTATTCTTCA
AGAAAAGCCCTCCACTAAAGGCTACATTGCAGTTGTGTTACCCAAATTTGAAGAAAGTAAAAGTATAACAGAAGGGTTAC
TGACACAAAAACAATATGAAGAAGTTGTGGCAAAATGTGTTAATGCCACCACGGCCACA

Alignment

ORF - retro_tbel_2689 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.08 %
• Parental protein coverage: 99.35 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VKGKPCEDHCILQHSNRICVITLAESHPVLQSGKIIKSISYQISTNCSRLQNKVSGKFKRGAQFLTELAP
          VKGKPCEDH.ILQHSNRICVITLAESHP.LQSGK.IKSISYQISTNCSRLQNKVSGKFKRGAQFLTELAP
Retrocopy VKGKPCEDHGILQHSNRICVITLAESHPALQSGKRIKSISYQISTNCSRLQNKVSGKFKRGAQFLTELAP

Parental  LCKISCSDGEEYTISSCVRGRLMEVNENILHKPSILQEKPSTEGYIAVVLPKFEESKSITEGLLTQKQYE
          LCKISCSDGEEYTISSCVRGRL.EVNENILHKPSILQEKPST.GYIAVVLPKFEESKSITEGLLTQKQYE
Retrocopy LCKISCSDGEEYTISSCVRGRLIEVNENILHKPSILQEKPSTKGYIAVVLPKFEESKSITEGLLTQKQYE

Parental  EVVAKRVNATTAT
          EVVAK.VNATTAT
Retrocopy EVVAKCVNATTAT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_2689 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_2689 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013637	1 retrocopy	retro_meug_1321,
Monodelphis domestica	ENSMODG00000012563	1 retrocopy	retro_mdom_1837,
Tupaia belangeri	ENSTBEG00000004984	2 retrocopies	retro_tbel_2689 , retro_tbel_385,