RetrogeneDB ID: retro_meug_1321

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold367557:670..949(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM206A
• Ensembl ID: ENSMEUG00000013637
• Aliases: None
• Description: family with sequence similarity 206, member A [Source:HGNC Symbol;Acc:1364]

Sequence

>retro_meug_1321
GGCGCAAAATTTCTAACAGAACTTGCACCTCTTTGTAGGATATCCTGTTCAGATGGAGAAGAATATACTGTGTCAAGCTG
CATGAGAGGATGGTTGATGGAGGTGAATGAAAATATACTAGATAAGCCATCCATTTTGCAGGAAAAGCCATCCACTGAGG
GATATATTGCTGTTGTGCTACCCAAATTTGAAGAAAGCAAGAGCGTTACTGTGGGATTATTGACACAAAAAGAATATGAA
GAAGTCGTGGTGAAAAGAATTAATAACAAATCAGAAACA

Alignment

ORF - retro_meug_1321 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.62 %
• Parental protein coverage: 51.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GAQFLTELAPLCRISCSDGEEYTVSSCVRGRLMEVNENILDKPSILQEKPSTEGYIAVVLPKFEESKSVT
          GA.FLTELAPLCRISCSDGEEYTVSSC.RG.LMEVNENILDKPSILQEKPSTEGYIAVVLPKFEESKSVT
Retrocopy GAKFLTELAPLCRISCSDGEEYTVSSCMRGWLMEVNENILDKPSILQEKPSTEGYIAVVLPKFEESKSVT

Parental  EGLLTQKEYEEVVVKRINNRSET
          .GLLTQKEYEEVVVKRINN.SET
Retrocopy VGLLTQKEYEEVVVKRINNKSET

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1321 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1321 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 14 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000004996	1 retrocopy	retro_btau_873,
Canis familiaris	ENSCAFG00000028510	1 retrocopy	retro_cfam_1345,
Cavia porcellus	ENSCPOG00000005927	1 retrocopy	retro_cpor_1488,
Dipodomys ordii	ENSDORG00000008618	1 retrocopy	retro_dord_611,
Homo sapiens	ENSG00000119328	1 retrocopy	retro_hsap_1197,
Macropus eugenii	ENSMEUG00000013637	1 retrocopy	retro_meug_1321 ,
Microcebus murinus	ENSMICG00000002074	1 retrocopy	retro_mmur_1363,
Monodelphis domestica	ENSMODG00000012563	1 retrocopy	retro_mdom_1837,
Oryctolagus cuniculus	ENSOCUG00000001882	1 retrocopy	retro_ocun_1527,
Otolemur garnettii	ENSOGAG00000024317	1 retrocopy	retro_ogar_1200,
Pongo abelii	ENSPPYG00000019483	1 retrocopy	retro_pabe_997,
Sorex araneus	ENSSARG00000009305	1 retrocopy	retro_sara_313,
Ictidomys tridecemlineatus	ENSSTOG00000027231	1 retrocopy	retro_itri_583,
Tupaia belangeri	ENSTBEG00000004984	2 retrocopies	retro_tbel_2689, retro_tbel_385,