RetrogeneDB ID: | retro_tbel_2961 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_125391:261689..262151(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSTBEG00000015642 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 70.97 % |
Parental protein coverage: | 61.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | NNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQPNYQ |
N.PRK.LRSVGD..TVE.DV....KGAE.A.VTGP..VP.QG.KYAAD.N..R.YP..RGPP.NYQ.NYQ | |
Retrocopy | NIPRKCLRSVGDRGTVESDVTDRVKGAEEADVTGPSRVPIQGRKYAADHNYGRHYPCLRGPPHNYQQNYQ |
Parental | NSESGEKNEGS--ESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGARELQG |
NSESGEKNEGS..ESAPEGQAQQ.RPYRR..F.PYYM..PYG...QYS.PPVQG.V.EGADNQ.A.E.QG | |
Retrocopy | NSESGEKNEGSGLESAPEGQAQQGRPYRRQSFNPYYMQGPYGL*SQYSHPPVQGKVLEGADNQDAGE-QG |
Parental | RPVRQNMYRGYRPRF |
RPVRQNMY.G....F | |
Retrocopy | RPVRQNMYLGLHTMF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |