RetrogeneDB ID: | retro_tbel_852 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3159:346770..347464(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUV39H2 | ||
Ensembl ID: | ENSTBEG00000006477 | ||
Aliases: | None | ||
Description: | suppressor of variegation 3-9 homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:17287] |
Percent Identity: | 86.32 % |
Parental protein coverage: | 56.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | ISLVNEATFGCSCTDCFFEKCCPAEAGVLLAYNK-NQQIKIPPGTPIYECNSRCQCGPDCPNRIVQKGTQ |
ISLVNEATFGCSCTDCFFEKCCP...GVLLAY.K.NQQIKIPPGTPIYEC.SRCQCGPDCPNRIVQ.GTQ | |
Retrocopy | ISLVNEATFGCSCTDCFFEKCCPVKVGVLLAYSK>NQQIKIPPGTPIYECSSRCQCGPDCPNRIVQQGTQ |
Parental | YSLCIFRTSNGCGWGVKTLV-KIKRMSFVMEYVGEVITSEEAERRGQLY-DNKGITYLFDLDYESDEFTV |
.SLCI..TSNGCGWGVKTLV.KIKRMSFVMEY.GEVITSEEAERRG....DNKGITYLFDLDYESDEFTV | |
Retrocopy | CSLCIL*TSNGCGWGVKTLV<KIKRMSFVMEYAGEVITSEEAERRGAVI>DNKGITYLFDLDYESDEFTV |
Parental | DAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSD-SID |
D.A.YGNVS.FVN..CDPN.QVFN.FIDNLDT.LP.I.LFSTR.INAGEELTF.YQMKGSGDIS...SI. | |
Retrocopy | DGAQYGNVSYFVNYNCDPNPQVFNIFIDNLDTHLPWIVLFSTRIINAGEELTFEYQMKGSGDISPGISIA |
Parental | HSPAKKRVRTVCKCGAVTCRGYLN |
HSPAKKRVRTVCKCGAVTCRGYLN | |
Retrocopy | HSPAKKRVRTVCKCGAVTCRGYLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004696 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008492 | 1 retrocopy | |
Homo sapiens | ENSG00000152455 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028243 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002803 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012108 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015090 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009465 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002106 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000006477 | 4 retrocopies |