RetrogeneDB - Retrocopy retro_tsyr

                        
>retro_tsyr_1008
AAAAGCCTACCATACATTTTCTCACCAATTCCATTTCTTGGGCATGCCATAGCATTTGGGAAAAGTCCGATTGAATTTTT

AGAAAATGCATATGAACAATATGGACCTGTATTTAGTTTTACCATGGTTGGCAAGACGTTCGCTTAACTTCTTGGGAGTG

ATCTTGCTGTACTGCTTTTTGCTAGTAAAAATGAGGGCCTGAATGCAAACGATGTCTACAGTCGTCTTACAACACCTCTG

CTTGAGAGAGGAGTCGCATATGATGTGCCTTATCCAGTTTTCTTGGAGCAGAAAAAATGTTAAAAAGTGGCCTTAACATA

GCCCAGTTCAGACAGCATGTTTCTCTAATTGAAAAGGAAACACAAGAATACTTTCAAAGTTGGGTAGAAAGTGGAGACAA

AAATTTGGTTGAAGCTCTTTCTGAGCTTATAATTTTAACAGCCAGATATTGTTTACATGGAAAAGAAATCAGAAGTCAAC

TTAATGAGAAGGTGACACAGTTGTATGTAGATTTGGATGGAGGTTTTAGCCATGCAACCTGGCTATTACTGGGTTGGTTG

CCTTTGCTTAGTTTCAGATGCAGGGCCAGAGCTCATTGAGAGATCAAGAATATTTTTTATAAAGCAATCCAGAAACACAG

ACAGTCAGAAGAAAAAAATTGATGACATTCTTCAAACTTTACTAGATTCTACATACAAGGATGGGCATCCTTTGACAGAT

GATGAAGTAGCAGGGATGCTTATTGGACAGCTATTGGCAGGGCAGCATACATCCTCAACTACTAGTGCCTGGATGGGCTT

CTTTGTGGCCAGAGACAAACACTTCAAGCAAAATGTTATTTAGACAGAAAACAGTCTGTGGAGAGGATATGCCTCCTTTA

TTTATGGCCAGCTCAGGATCTACATTTACTTGATCCCTGTATAAAAGAAACATTA

ORF - retro_tsyr_1008 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	84.64 %
Parental protein coverage:	71.3 %
Number of stop codons detected:	2
Number of frameshifts detected:	6

Retrocopy - Parental Gene Alignment:

                                ParentalKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEQYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAE
KS.PYIFSPIPFLGHAIAFGKSPIEFLENAYEQYGPVFSFTMVGKTF..LLGSD.A.LLF.SKNE.LNA.
RetrocopyKSLPYIFSPIPFLGHAIAFGKSPIEFLENAYEQYGPVFSFTMVGKTFA*LLGSDLAVLLFASKNEGLNAN
ParentalDVYSRLTTPVFGRGVAYDVPNPVFLEQKK-MLKSGLNITHFRQHVSIIEKETQEYFQSWGESGEKNLFEA
DVYSRLTTP...RGVAYDVP.PVFLEQKK.MLKSGLNI..FRQHVS.IEKETQEYFQSW.ESG.KNL.EA
RetrocopyDVYSRLTTPLLERGVAYDVPYPVFLEQKK<MLKSGLNIAQFRQHVSLIEKETQEYFQSWVESGDKNLVEA
ParentalLSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAWLLPGWLPLPSFRRRDRAHREIKNIFYKA
LSELIILTA..CLHGKEIRSQLNEKV.QLY.DLDGGFSHA.WLL.GWLPL.SFR.R.RAH.EIKNIFYKA
RetrocopyLSELIILTARYCLHGKEIRSQLNEKVTQLYVDLDGGFSHATWLLLGWLPLLSFRCRARAH*EIKNIFYKA
ParentalIQKRRQSEE-KIDDILQTLLESTYKDGRPLTDEEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDK-TFQE
IQK.RQSEE.KIDDILQTLL.STYKDG.PLTD.EVAGMLIG.LLAGQHTSSTTSAWMGFF.ARDK.T.Q.
RetrocopyIQKHRQSEE>KIDDILQTLLDSTYKDGHPLTDDEVAGMLIGQLLAGQHTSSTTSAWMGFFVARDK<TLQA
ParentalKCYLE-QKTVCGEDLPPL-TYDQLK-DLNLLDRCIKETL
KCYL..QKTVCGED.PPL..Y.QL..DL.LLD.CIKETL
RetrocopyKCYLD<QKTVCGEDMPPL<IYGQLR<DLHLLDPCIKETL

                            

                            Legend:
                            
                                *Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

                        

RNA-Seq - click to see more details

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tarsius syrichta was not studied using ChIP-Seq data.

EST - click to see more details

Tarsius syrichta was not studied using EST data.

TSS - click to see more details

Tarsius syrichta was not studied using FANTOM5 data.

Lab - click to see more details

retro_tsyr_1008 was not experimentally validated.

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000005722	1 retrocopy	retro_amel_1512,
Homo sapiens	ENSG00000001630	2 retrocopies	retro_hsap_1248, retro_hsap_2807,
Loxodonta africana	ENSLAFG00000000066	1 retrocopy	retro_lafr_272,
Monodelphis domestica	ENSMODG00000010610	1 retrocopy	retro_mdom_436,
Pongo abelii	ENSPPYG00000017824	2 retrocopies	retro_pabe_1039, retro_pabe_1040,
Pan troglodytes	ENSPTRG00000019391	2 retrocopies	retro_ptro_1901, retro_ptro_859,
Tarsius syrichta	ENSTSYG00000014341	1 retrocopy	retro_tsyr_1008 ,

	RetrogeneDB ID:	retro_tsyr_1008
Retrocopy location	Organism:	*Tarsier (Tarsius syrichta)*
	Coordinates:	scaffold_274552:989..1924(+)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	None
	Aliases:	None
	Status:	NOVEL
Parental gene information	Parental gene summary:
	Parental gene symbol:	CYP51A1
	Ensembl ID:	ENSTSYG00000014341
	Aliases:	None
	Description:	cytochrome P450, family 51, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:2649]

Parental	KSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEQYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAE
	KS.PYIFSPIPFLGHAIAFGKSPIEFLENAYEQYGPVFSFTMVGKTF..LLGSD.A.LLF.SKNE.LNA.
Retrocopy	KSLPYIFSPIPFLGHAIAFGKSPIEFLENAYEQYGPVFSFTMVGKTFA*LLGSDLAVLLFASKNEGLNAN

Parental	DVYSRLTTPVFGRGVAYDVPNPVFLEQKK-MLKSGLNITHFRQHVSIIEKETQEYFQSWGESGEKNLFEA
	DVYSRLTTP...RGVAYDVP.PVFLEQKK.MLKSGLNI..FRQHVS.IEKETQEYFQSW.ESG.KNL.EA
Retrocopy	DVYSRLTTPLLERGVAYDVPYPVFLEQKK<MLKSGLNIAQFRQHVSLIEKETQEYFQSWVESGDKNLVEA

Parental	LSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAWLLPGWLPLPSFRRRDRAHREIKNIFYKA
	LSELIILTA..CLHGKEIRSQLNEKV.QLY.DLDGGFSHA.WLL.GWLPL.SFR.R.RAH.EIKNIFYKA
Retrocopy	LSELIILTARYCLHGKEIRSQLNEKVTQLYVDLDGGFSHATWLLLGWLPLLSFRCRARAH*EIKNIFYKA

Parental	IQKRRQSEE-KIDDILQTLLESTYKDGRPLTDEEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDK-TFQE
	IQK.RQSEE.KIDDILQTLL.STYKDG.PLTD.EVAGMLIG.LLAGQHTSSTTSAWMGFF.ARDK.T.Q.
Retrocopy	IQKHRQSEE>KIDDILQTLLDSTYKDGHPLTDDEVAGMLIGQLLAGQHTSSTTSAWMGFFVARDK<TLQA

Parental	KCYLE-QKTVCGEDLPPL-TYDQLK-DLNLLDRCIKETL
	KCYL..QKTVCGED.PPL..Y.QL..DL.LLD.CIKETL
Retrocopy	KCYLD<QKTVCGEDMPPL<IYGQLR<DLHLLDPCIKETL

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_tsyr_1008