RetrogeneDB ID: | retro_tsyr_1444 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_44343:13716..14969(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GALNT1 | ||
Ensembl ID: | ENSTSYG00000014610 | ||
Aliases: | None | ||
Description: | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) [Source:HGNC Symbol;Acc:4123] |
Percent Identity: | 92.87 % |
Parental protein coverage: | 74.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MRKFAYCKVVLATSLIWVLLDMFLLLYFSECNKCDEK-KERGLPAGDVLEPVQKPHEGPGEMGKPVVIPK |
MRKFAYCKVVLATSLIWVLLDMFLLLYFSECNKCDEK.KERGLPAGDVLEPVQK.H.GPGEMGKPVVIPK | |
Retrocopy | MRKFAYCKVVLATSLIWVLLDMFLLLYFSECNKCDEK<KERGLPAGDVLEPVQKLHLGPGEMGKPVVIPK |
Parental | EDQDKMKEMFKINQFNLMASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSV |
EDQDKMKEMFKINQFNLM.SEM.ALNRSL.DVRLEG.KTKV.PDNLPTTSVVIVFH.EAWSTLLR.VHSV | |
Retrocopy | EDQDKMKEMFKINQFNLMVSEMTALNRSLQDVRLEGYKTKVHPDNLPTTSVVIVFHYEAWSTLLRNVHSV |
Parental | INRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSKGQVITFLD |
INRSPR.MIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVI.MEQ.SGLIRARLKG.AVSKGQVITFLD | |
Retrocopy | INRSPRYMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIQMEQCSGLIRARLKGVAVSKGQVITFLD |
Parental | AHCECTVGWLEPLLARIKQD-RTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRK |
AHCECTVGWLEP.LARIKQD.RTVVCPIIDVIS.DTFEYMAGSDMTYGGFNWK.NF.WYPVPQREMDRRK | |
Retrocopy | AHCECTVGWLEPHLARIKQDRRTVVCPIIDVISNDTFEYMAGSDMTYGGFNWKPNFHWYPVPQREMDRRK |
Parental | GDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHV-GHVFRK |
GD..LP.RTPTMAGGLFSIDR.YFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHV.GHVFR. | |
Retrocopy | GDWILPIRTPTMAGGLFSIDRGYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHV<GHVFRE |
Parental | ATPYTFPGGTGQIINKNN-RRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRHKLQCNPFSWYLEN |
ATPYTFPGGTGQIINKNN.R.LAEVWMD.FKNFFYIISPGVTKVDYGDISSRLGLRHKL.C.PFSWYLEN | |
Retrocopy | ATPYTFPGGTGQIINKNN>RLLAEVWMDKFKNFFYIISPGVTKVDYGDISSRLGLRHKLHCKPFSWYLEN |
Parental | I |
I | |
Retrocopy | I |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011206 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021030 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000001978 | 1 retrocopy | |
Mus musculus | ENSMUSG00000000420 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003311 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004975 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014610 | 1 retrocopy |
retro_tsyr_1444 ,
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