RetrogeneDB ID: | retro_tsyr_386 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_107522:5034..5850(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GALNT12 | ||
Ensembl ID: | ENSTSYG00000004975 | ||
Aliases: | None | ||
Description: | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) [Source:HGNC Symbol;Acc:19877] |
Percent Identity: | 51.82 % |
Parental protein coverage: | 59.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SPTMAGGLFAVSKKYFEYLGSYDTGMEVWGGENLEFSFRIWQCGGTLETHPCSHVGHVFPKQAPYSRNKA |
.PTMAGGLFAVSKKYF.YLG.YDTGMEVWGGENLE.SFR.WQCGG.LE.HPCSHVGHVFPK.APY.R... | |
Retrocopy | TPTMAGGLFAVSKKYFQYLGTYDTGMEVWGGENLELSFRVWQCGGKLEIHPCSHVGHVFPKRAPYARPNF |
Parental | LANSVRAAEVWMDEFKELYYHRNPRARLEPFGDVTERRQLRSKLQCKDFKWFLETVYPELHVPEDRAGFF |
L.N..RAAEVWMD..KE..Y.RNP.AR.E..GD..ER..LR..L.CK.F.W.L..V.P.LHVPEDR.G.. | |
Retrocopy | LQNTARAAEVWMDQYKEHFYNRNPPARKEAYGDISERKLLRERLRCKSFDWYLKNVFPNLHVPEDRPGWH |
Parental | GMVHDKGLKEYCFDYNPPDDTQIVPDLILLYVCLGTYQPLFFEYTSQNEIRYNTRQPEACVAVEAGSDTL |
G.....G....C.DYN.PD.......L..L..C.G.....FFEYTS..EIR.N....E.C..V....... | |
Retrocopy | GAIRSMGISSECLDYNSPDNNPTGANL-SLFGCHGQGGNQFFEYTSNKEIRFNS-VTELCAEVPEQKNHV |
Parental | IMQLCAK---TAPENQKFILQKDGSLFHKQSKKCVQALRKELSDSFVPLLQDCTNSDHQKWFFK |
.MQ.C.K.....P.N.......DG..FH..S..C..A.R.......V...........Q.W.F. | |
Retrocopy | GMQNCPKDGFPVPANIIWHFKEDGTIFHPHSGLCLSAYRTPEGHPNVQMRTCDALDKNQIWSFE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |