RetrogeneDB ID:

retro_tsyr_1550

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_48628:2020..2234(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTSYG00000009556
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_tsyr_1550
ATGGTAGGAGTCATCCTGCTGTTGGGACGCCACTGATGAATGCTGGGGCGATGCTCAACTTCAAGCTGAAAAAGAAGGGC
ATGCAGGGCTTTGGGGAGGAGTCGTGTGACCCCAGCACAGGTGACAACATCCGGGAATTCTTATGAGCCTCGGATACTTC
GGAATCTTCATCTCCCTGTAGAACGGCTTTATGATGTTCTGCGTAATTGTGCTG

ORF - retro_tsyr_1550 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.32 %
Parental protein coverage: 69.23 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMIGDILLFG-TLLMNAGAVLNFKLKKKDTQGFGEESREPSTGDNIRE-ILLSIRYFRIFIALWNVFMMFC
M.G.ILL.G.T.LMNAGA.LNFKLKKK..QGFGEES..PSTGDNIRE.IL.S..YF.IFI.L.N.FMMFC
RetrocopyMVGVILLLG<TPLMNAGAMLNFKLKKKGMQGFGEESCDPSTGDNIRE<ILMSLGYFGIFISL*NGFMMFC
ParentalMIVL
.IVL
RetrocopyVIVL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1550 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 17 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000101051 retrocopy
Canis familiaris ENSCAFG000000156431 retrocopy
Callithrix jacchus ENSCJAG000000139361 retrocopy
Equus caballus ENSECAG000000268611 retrocopy
Felis catus ENSFCAG000000164111 retrocopy
Homo sapiens ENSG000002140461 retrocopy
Mus musculus ENSMUSG000000446001 retrocopy
Nomascus leucogenys ENSNLEG000000055691 retrocopy
Pongo abelii ENSPPYG000000096942 retrocopies
Pan troglodytes ENSPTRG000000106501 retrocopy
Rattus norvegicus ENSRNOG000000420371 retrocopy
Sus scrofa ENSSSCG000000138631 retrocopy
Tarsius syrichta ENSTSYG00000009556 1 retrocopy
retro_tsyr_1550 ,
Tursiops truncatus ENSTTRG000000150202 retrocopies
Vicugna pacos ENSVPAG000000066991 retrocopy



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