RetrogeneDB ID: | retro_tsyr_2125 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_93353:7080..7894(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000003440 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.09 % |
Parental protein coverage: | 63.93 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYAPWAIIGDLEPGTMDSGQGFGPFGQIFRPD |
FWEVISDEH..DPTG.Y.GDS.LQL..I..YYNEATG.K....AI..DLEPGTMDS....GPFGQIFR.D | |
Retrocopy | FWEVISDEHDVDPTGTYNGDSNLQLDCISMYYNEATGGKFTVCAIPVDLEPGTMDSVHS-GPFGQIFRLD |
Parental | NFVFGQSGAGNNWAKGHYTEG-AELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE |
NFV.GQSG.GNNWAKGHY.EG.AELV.SVLDVVRKE.ESCDCLQ.FQLTH.LG..TGSGM.TLLISKI.E | |
Retrocopy | NFVLGQSGMGNNWAKGHYAEG<AELVNSVLDVVRKEAESCDCLQAFQLTH*LGRSTGSGMDTLLISKI*E |
Parental | EYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNH |
EY.D.IMNTFSV.PSPKVSDTVVEPYNAT.SVHQ..ENTDETY.IDNE.LYDICF..LKLTTP.YGDLNH | |
Retrocopy | EYLDHIMNTFSVVPSPKVSDTVVEPYNATPSVHQSIENTDETYYIDNETLYDICFCILKLTTPSYGDLNH |
Parental | LVSATMSGVTTCLRFPGQLNADLRKLAV-NMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQ |
L.S.T.S.VTTCL.FPG.LNADLRKLAV....PFP.L.FF...FAPLT..GS.QYR.LTVPELTQ | |
Retrocopy | LLSVTKSSVTTCLHFPGHLNADLRKLAV<HIGPFPHL*FFISDFAPLTIHGSPQYRGLTVPELTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017637 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016179 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004854 | 9 retrocopies | |
Tarsius syrichta | ENSTSYG00000002994 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000003440 | 2 retrocopies |
retro_tsyr_1068, retro_tsyr_2125 ,
|