RetrogeneDB ID: retro_tsyr_263

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: GeneScaffold_6605:10089..10581(+)
• Located in intron of: ENSTSYG00000009803

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZDHHC21
• Ensembl ID: ENSTSYG00000006767
• Aliases: None
• Description: zinc finger, DHHC-type containing 21 [Source:HGNC Symbol;Acc:20750]

Sequence

>retro_tsyr_263
ATGTGTCTCCAGAGTCACTTTGTTGTTGATCCACATGGTTGGTGCTGCATGGGTTTGATTGTCTTTGTCTGCTTATACAA
TATTGTTTTAATTCCCAAAATTGTCCTCTTTCCTCACTATGAAGAAGGACATATTCCAGGCATATTAATAATAATATTCT
ATGGCATTACCATATTTTGTCTGATTGCCTTAGTAAGGGCCTCAATTACTGATCCAGGAAGACTCCCTGAGAACCTTAAG
ATTCCACATGGAGAAAGGGAGTTCTGGGAATTATGTAACAAGTGTAATTAGATGAGACCAAAGTGTTGGCATCACTGTAG
CTGCTGTGGTCACTGTGTAAGGAGAATGGATCATCACAGTCCATGGATTAACAATTGTGTTGATGAAGATAATCACTGGT
TTTTTCTGCAGTTGTGTTTCTACACTGAACTTCTTACTTGCTACACACTGATGTCTTCTTTCTGCCACTATTATTATTTC
CTTCCACTAAAA

Alignment

ORF - retro_tsyr_263 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.63 %
• Parental protein coverage: 61.89 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGLRIHFVADPHGWCCMGLIVFVWLYNIVLIPKIVLFPHYEEGHIPGILIIIFYGIAIFCLVALVRASIT
          M.L..HFV.DPHGWCCMGLIVFV.LYNIVLIPKIVLFPHYEEGHIPGILIIIFYGI.IFCL.ALVRASIT
Retrocopy MCLQSHFVVDPHGWCCMGLIVFVCLYNIVLIPKIVLFPHYEEGHIPGILIIIFYGITIFCLIALVRASIT

Parental  DPGRLPENPKIPHGEREFWELCNKCNLMRPKRSHHCSRCGHCVRRMDHHCPWINNCVGEDNHWLFLQLCF
          DPGRLPEN.KIPHGEREFWELCNKCN.MRPK..HHCS.CGHCVRRMDHH.PWINNCV.EDNHW.FLQLCF
Retrocopy DPGRLPENLKIPHGEREFWELCNKCN*MRPKCWHHCSCCGHCVRRMDHHSPWINNCVDEDNHWFFLQLCF

Parental  YTELLTCYALMFSFCHYYYFLPLK
          YTELLTCY.LM.SFCHYYYFLPLK
Retrocopy YTELLTCYTLMSSFCHYYYFLPLK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_263 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000003013	1 retrocopy	retro_tsyr_998,
Tarsius syrichta	ENSTSYG00000006767	1 retrocopy	retro_tsyr_263 ,
Tarsius syrichta	ENSTSYG00000012575	1 retrocopy	retro_tsyr_1557,