RetrogeneDB ID: retro_tsyr_483

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_124963:630..1170(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BZW1
• Ensembl ID: ENSTSYG00000013638
• Aliases: None
• Description: basic leucine zipper and W2 domains 1 [Source:HGNC Symbol;Acc:18380]

Sequence

>retro_tsyr_483
ATGAATAATCAAAAGCAGCAGAAGCCAACGCTATCAGGCCAGTGTTTTAAAACCAGAAAAAGAGATGAAAAAGAGAGGTT
TGACCCTACTCAGTTTCAAGACTGTATTATTCAAGGCTTAACTGAAACTGGTACTGATTTGGAAGCAGTAGCTAAGTTTC
TTGATGCTTCTGGAACAAAACTTGATTACCGCCGATATGCAGAAACTTTCTTTGACATTCTGGTGGCCGGTGGAATGCTG
GCCCCAGGTGGTACACTGGCAGATGACATGATGCGTACAGATGTCTGTATGTTTGCAGCACAAGAAGACCTAGAGACCAT
GCAAGCATTTGCTCAGGTTTTTAACAAGTTAATCAGGCGCTACAAATACCTGGAGAAAGGTTTTGAAGATGAAGTAAAAA
AACTGCTGCTGTTCTTGAAGGGTTTTTCTGAGTCAGAGAGGAACAAACTGGCTATGTTGACTGGTATTCTTCTGGCTAAT
GGGATACTGAATGCATCCATTCTTAACAGCCTTTACAATGAGAATCCGGTTAAAGAAGGG

Alignment

ORF - retro_tsyr_483 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.11 %
• Parental protein coverage: 50.99 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MNNQKQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASGAKLDYRRYAETL
          MNNQKQQKPTLSGQ.FKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASG.KLDYRRYAET.
Retrocopy MNNQKQQKPTLSGQCFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASGTKLDYRRYAETF

Parental  FDILVAGGMLAPGGTLADDMMRTDVCVFAAQEDLETMQAFAQVFNKLIRRYKYLEKGFEDEVKKLLLFLK
          FDILVAGGMLAPGGTLADDMMRTDVC.FAAQEDLETMQAFAQVFNKLIRRYKYLEKGFEDEVKKLLLFLK
Retrocopy FDILVAGGMLAPGGTLADDMMRTDVCMFAAQEDLETMQAFAQVFNKLIRRYKYLEKGFEDEVKKLLLFLK

Parental  GFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEG
          GFSESERNKLAMLTG.LLANG.LNASILNSLYNEN.VKEG
Retrocopy GFSESERNKLAMLTGILLANGILNASILNSLYNENPVKEG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_483 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003543	8 retrocopies	retro_chof_1519, retro_chof_2060, retro_chof_2092, retro_chof_2451, retro_chof_2517, retro_chof_689, retro_chof_726, retro_chof_838,
Microcebus murinus	ENSMICG00000003355	1 retrocopy	retro_mmur_831,
Monodelphis domestica	ENSMODG00000015000	1 retrocopy	retro_mdom_1747,
Tarsius syrichta	ENSTSYG00000009806	1 retrocopy	retro_tsyr_1923,
Tarsius syrichta	ENSTSYG00000013638	2 retrocopies	retro_tsyr_2177, retro_tsyr_483 ,
Tursiops truncatus	ENSTTRG00000003639	1 retrocopy	retro_ttru_153,