RetrogeneDB ID: retro_tsyr_1923

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_67266:5361..6590(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BZW2
• Ensembl ID: ENSTSYG00000009806
• Aliases: None
• Description: basic leucine zipper and W2 domains 2 [Source:HGNC Symbol;Acc:18808]

Sequence

>retro_tsyr_1923
AAGCAGCAGAAGCCAACGCTATCAGGCCAGCATTTTAAAACCAGAAAATGAGATGAAAAAGAGAGGTTTGACCCTACTCA
GTTTCAAGACTGTATTATTCAAGGCTTAACTGAAACTGGTACTGATTTGGAAGCAGTAGCTAAGTTTCTTGATGCTTCTG
GAGCAAAACTTGATTACTGCCAATATGCAGAAACTCTCTTTGACATTCTGGTGGCTGGTGGAATGCTGGCCCCAGGTGGT
ACACTGGCAGATGACATGATGCGTACAGATGTCTGTGTGTTGCAGCACAAGAAGACCTAGAGACCATGCAAGCATTTGCT
CAGGTTTTTAACAAGTTAATCAGGTGCTACAAATACCTGGAGAAAGGTTCTAAAGATGAAGTAAAAAAGCTGCTGCTGTT
CTTGAAGGGTTTTTCTGAGTCAGAGAGGAACAAACTGGCTATGTTGACTGATGTTCTTCTGGCTAATGGGACACTGAACG
CATCCATTCTTAACAGCCTTTATAATGAGAATCTGGTTAAAGAAGGGGTTTCAGCGGCTTTTGCTGTAAAGCTCTTAAAG
TCATGGATAAATGAAAAAGACATCAATGCAGTAACTGCAAGCCTTTGGAAAGTCAGCATGGACAACAGACTGATAGAACT
GTTTCATGCCAATAAGCAAAGTGTTGAACACTTCACAAAGTATTTTACTGAGGCAGGCTTGAAAGAGCTTTCAGAGTATG
TTCGGAATCAGCAAACTATAGGTGCACGGAAGGATCTCCAGAAAGAGCTTCAGGAACAGATGTCCTACGGGGATCTGTTC
AAGGATATAATTTTATATGTCAAGGAGGAGATGAAAAAAAACAACATCCCGGAACCGGTGGTCATCTGGCCAAGTGTCAT
GAGCACTGTGGAGTGGAACAAAAGAGAGGAGCTTGTAGCAGAGCAAGCAATCAAGCACTTGAAGTAATACAACCCTCTGC
TTGCTACCTTTACTACTCAAGGTCAGTCTGAGCTGACTCTATTACTGAAGATTCAGGAGTATTGCTATGACAACATTCAC
TTCATGAAAGCCTTCCAGAAAATAGTGGTGCTTTTTTATAAAGCTGAGGTCCTGAGTGAAGAGTCCATTCTGAAGTGGTA
TAAGGATGCACACGTTGCAAAGGGGAAAAGTGTCTTTCTTGAGCAAATGAAAAAGTTTGTAGAGTGGCTCAAAAATGCTG
AAGAGGAATCTGAGTCTGAAGCTGAAGAA

Alignment

ORF - retro_tsyr_1923 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.35 %
• Parental protein coverage: 99.28 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLDYRRYADTLFDIL
          K.QKP.L.GQ.FKTRK.DEKE.F.PT.F.D...QGL.E.G.DLEAVAKFLD..G..LDY..YA.TLFDIL
Retrocopy KQQKPTLSGQHFKTRK*DEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASGAKLDYCQYAETLFDIL

Parental  VAGSMLAPGGTRIDDGDKTKMTNHCVF-SANEDHETIRNYAQVFNKLIRRYKYLEKAFEDEMKKLLLFLK
          VAG.MLAPGGT..DD...T.....CV...A.ED.ET....AQVFNKLIR.YKYLEK...DE.KKLLLFLK
Retrocopy VAGGMLAPGGTLADDMMRTDV---CVL<AAQEDLETMQAFAQVFNKLIRCYKYLEKGSKDEVKKLLLFLK

Parental  AFSETEQTKLAMLSGILLGNGTLPATILTSLFTDNLVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKAN
          .FSE.E..KLAML...LL.NGTL.A.IL.SL...NLVKEG..A.FAVKL.K.W..EKD.N.VT.SL.K..
Retrocopy GFSESERNKLAMLTDVLLANGTLNASILNSLYNENLVKEGVSAAFAVKLLKSWINEKDINAVTASLWKVS

Parental  LDKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKE
          .D.RL.ELF..N.QSV.HF.KYFT.AGLKELS...R.QQ..G.RK.LQKELQE..S.....K...LYVKE
Retrocopy MDNRLIELFHANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKDLQKELQEQMSYGDLFKDIILYVKE

Parental  EMKRNELPETAVIGLLWTCIMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSELILLQKVQEYCY
          EM.....PE..VI...W...M..VEWNK.EELVAEQA.KHLK.Y.PLLA.F..QGQSEL.LL.K.QEYCY
Retrocopy EMXXXNIPEPVVI---WPSVMSTVEWNKREELVAEQAIKHLK*YNPLLATFTTQGQSELTLLLKIQEYCY

Parental  DNIHFMKAFQKIVVLFYKADVLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEESESEGEE
          DNIHFMKAFQKIVVLFYKA.VLSEE.ILKWYK.AHVAKGKSVFL.QMKKFVEWL.NAEEESESE.EE
Retrocopy DNIHFMKAFQKIVVLFYKAEVLSEESILKWYKDAHVAKGKSVFLEQMKKFVEWLKNAEEESESEAEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1923 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000001663	4 retrocopies	retro_dnov_2177, retro_dnov_2422, retro_dnov_2649, retro_dnov_575,
Equus caballus	ENSECAG00000022038	1 retrocopy	retro_ecab_1121,
Macaca mulatta	ENSMMUG00000017045	1 retrocopy	retro_mmul_1457,
Ochotona princeps	ENSOPRG00000005256	2 retrocopies	retro_opri_665, retro_opri_9,
Pongo abelii	ENSPPYG00000017763	1 retrocopy	retro_pabe_2385,
Pteropus vampyrus	ENSPVAG00000014571	1 retrocopy	retro_pvam_481,
Ictidomys tridecemlineatus	ENSSTOG00000002506	1 retrocopy	retro_itri_1286,
Tarsius syrichta	ENSTSYG00000009806	1 retrocopy	retro_tsyr_1923 ,
Tarsius syrichta	ENSTSYG00000013638	2 retrocopies	retro_tsyr_2177, retro_tsyr_483,
Tursiops truncatus	ENSTTRG00000009867	1 retrocopy	retro_ttru_162,