RetrogeneDB ID: retro_ttru_1141

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_105445:99685..100142(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTTRG00000009880
• Aliases: None
• Description: None

Sequence

>retro_ttru_1141
ATTGAAGGCCCTGCAAGCATGGTGTCATCGAAGGGGAGGAAGGACATGCCCCAGCTGGGGGGCTACAGCCCTATCGACTA
CAAGCGGAACCTTCCGCGTCGGGGGCTGTCGGGCTACAGCATGGTCGCCATGGGCATCGGGACCTTGCTCTTTGTGTACT
GGAGCATGATGAAGTGGAACTGCGAACGCAGGCGCCTGCAGATCCAGGAGTTCGAGGCCCGCATTGCGCTGATGCCTTTG
TTGCAGGCAGAGAAGGACCGGAAGCTTCTCCAGATACTTCGGGAGAACTTGGAGGAGGAGGCGATCATCGTGAAGGGCGT
GCCAGATGGGAAAGGTAGGTGAGTCCGTGTTACACACAACGTGCTGGGTGACCCCCATGCTGGGCAAGCTTTACGGGCTG
CGCATGTGCACAAACGAGGAGGTTCTCAATGCCACCTCCGGCTTCAAGCAGTACACT

Alignment

ORF - retro_ttru_1141 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.12 %
• Parental protein coverage: 66.08 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VQGPVSMAASKVKQDMPPLGGYGPIDYKRNLPRRGLSGYSMFAVGIGTLLFGYWSMMKWNRERRRLQIED
          ..GP.SM..SK...DMP.LGGY.PIDYKRNLPRRGLSGYSM.A.GIGTLLF.YWSMMKWN.ERRRLQI..
Retrocopy IEGPASMVSSKGRKDMPQLGGYSPIDYKRNLPRRGLSGYSMVAMGIGTLLFVYWSMMKWNCERRRLQIQE

Parental  FEARIALMPLLQAEKDRRVLQMLRENLEEEAIIMKDVPD-WKVGESVFHTTRWVTPMMGELYGLR--TNE
          FEARIALMPLLQAEKDR..LQ.LRENLEEEAII.K.VPD..KVGESV.HTT.WVTPM.G.LYGLR..TNE
Retrocopy FEARIALMPLLQAEKDRKLLQILRENLEEEAIIVKGVPD>GKVGESVLHTTCWVTPMLGKLYGLRMCTNE

Parental  EILRSTYGFRWYT
          E.L..T.GF..YT
Retrocopy EVLNATSGFKQYT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1141 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1141 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000034503	1 retrocopy	retro_cjac_262,
Mus musculus	ENSMUSG00000036199	1 retrocopy	retro_mmus_2453,
Rattus norvegicus	ENSRNOG00000020602	2 retrocopies	retro_rnor_210, retro_rnor_629,
Sorex araneus	ENSSARG00000004735	1 retrocopy	retro_sara_693,
Sus scrofa	ENSSSCG00000013936	3 retrocopies	retro_sscr_707, retro_sscr_722, retro_sscr_739,
Tursiops truncatus	ENSTTRG00000009880	1 retrocopy	retro_ttru_1141 ,