RetrogeneDB ID: | retro_ttru_1184 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_106626:105831..106233(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDCL3 | ||
Ensembl ID: | ENSTTRG00000006242 | ||
Aliases: | None | ||
Description: | phosducin-like 3 [Source:HGNC Symbol;Acc:28860] |
Percent Identity: | 85.82 % |
Parental protein coverage: | 55.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VTKAGEGLWVILHLYRQGIPLCALINQHFIGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIK |
V.KAGEGLWVILHLY.QGIPLC.LINQHF.GLAR.FPDVKFIKAISTTCIP.YPDRNLPT..V.LEGDIK | |
Retrocopy | VNKAGEGLWVILHLYKQGIPLCSLINQHFSGLARRFPDVKFIKAISTTCIPSYPDRNLPTTCVCLEGDIK |
Parental | AQFIGPLVFGGMSLTMDELEWKLSESGAVKTSLEENPKKPIEDVLLSSVLCSVPARRASDSEDD |
A.FIGPLVFGG..LTMDELEWKLSESGA.KTSLEENPKK.IEDVLLSSV..S.P.RR.SDSEDD | |
Retrocopy | AEFIGPLVFGGTNLTMDELEWKLSESGAIKTSLEENPKKLIEDVLLSSVQYSIPTRRDSDSEDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002226 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010160 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000012397 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000000224 | 1 retrocopy | |
Homo sapiens | ENSG00000115539 | 7 retrocopies | |
Microcebus murinus | ENSMICG00000000657 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016446 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001489 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026078 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014393 | 8 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000001469 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000015138 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000011600 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000006242 | 1 retrocopy |
retro_ttru_1184 ,
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