RetrogeneDB ID:

retro_ttru_1184

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_106626:105831..106233(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PDCL3
Ensembl ID:ENSTTRG00000006242
Aliases:None
Description:phosducin-like 3 [Source:HGNC Symbol;Acc:28860]


Retrocopy-Parental alignment summary:






>retro_ttru_1184
GTTAACAAAGCTGGTGAGGGCTTGTGGGTCATCCTGCACCTTTACAAACAAGGGATTCCCCTCTGTTCTCTGATAAATCA
GCACTTCAGTGGACTTGCCAGGAGGTTTCCTGATGTCAAATTTATCAAAGCCATTTCAACAACCTGCATACCCAGTTATC
CTGATAGGAATCTGCCCACGACGTGTGTGTGCCTTGAAGGTGATATCAAGGCTGAATTTATTGGACCTCTGGTGTTTGGT
GGCACGAACCTGACAATGGACGAGTTGGAGTGGAAATTGTCTGAGTCTGGAGCAATCAAGACAAGCCTGGAGGAAAACCC
TAAGAAACTCATAGAAGATGTGCTGCTTTCCTCCGTGCAATACTCCATCCCCACCAGGAGGGACAGTGATTCCGAGGATG
AC

ORF - retro_ttru_1184 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.82 %
Parental protein coverage: 55.83 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVTKAGEGLWVILHLYRQGIPLCALINQHFIGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIK
V.KAGEGLWVILHLY.QGIPLC.LINQHF.GLAR.FPDVKFIKAISTTCIP.YPDRNLPT..V.LEGDIK
RetrocopyVNKAGEGLWVILHLYKQGIPLCSLINQHFSGLARRFPDVKFIKAISTTCIPSYPDRNLPTTCVCLEGDIK
ParentalAQFIGPLVFGGMSLTMDELEWKLSESGAVKTSLEENPKKPIEDVLLSSVLCSVPARRASDSEDD
A.FIGPLVFGG..LTMDELEWKLSESGA.KTSLEENPKK.IEDVLLSSV..S.P.RR.SDSEDD
RetrocopyAEFIGPLVFGGTNLTMDELEWKLSESGAIKTSLEENPKKLIEDVLLSSVQYSIPTRRDSDSEDD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1184 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1184 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 32 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000022261 retrocopy
Callithrix jacchus ENSCJAG000000101603 retrocopies
Dipodomys ordii ENSDORG000000123971 retrocopy
Erinaceus europaeus ENSEEUG000000002241 retrocopy
Homo sapiens ENSG000001155397 retrocopies
Microcebus murinus ENSMICG000000006571 retrocopy
Myotis lucifugus ENSMLUG000000164461 retrocopy
Monodelphis domestica ENSMODG000000014891 retrocopy
Mus musculus ENSMUSG000000260781 retrocopy
Nomascus leucogenys ENSNLEG000000143938 retrocopies
Oryctolagus cuniculus ENSOCUG000000014692 retrocopies
Otolemur garnettii ENSOGAG000000151382 retrocopies
Ochotona princeps ENSOPRG000000116002 retrocopies
Tursiops truncatus ENSTTRG00000006242 1 retrocopy
retro_ttru_1184 ,



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