RetrogeneDB ID: | retro_ttru_155 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1408:11440..12610(-) | ||
Located in intron of: | ENSTTRG00000007635 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NOLC1 | ||
Ensembl ID: | ENSTTRG00000014974 | ||
Aliases: | None | ||
Description: | nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:15608] |
Percent Identity: | 67.33 % |
Parental protein coverage: | 55.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADAGLRRVVPSDLYPLVLGFLRDNQLSDVANKFAKATGATQQDANASSLLDIYSFWLKSTKAPKRKLQA |
M.DAGLRRVVPSDLYPLVLGFLRDNQLSDV.NKFAKATGATQQDANASSLLDIYSFWLKSTKAPKRKLQA | |
Retrocopy | MVDAGLRRVVPSDLYPLVLGFLRDNQLSDVVNKFAKATGATQQDANASSLLDIYSFWLKSTKAPKRKLQA |
Parental | NGPVTKKAKKKTSSSDSSEDSSEEEKTQGPPAKKAAVPAKRASLLQHPGKAAVKASESSSSSEESSDDEE |
NGPVTKKAKKKTSSS.........EKTQGPPAKKAAVPAKRASLLQHPGKAAVKASESSSSSEESSD.EE | |
Retrocopy | NGPVTKKAKKKTSSSXXXXXXXXXEKTQGPPAKKAAVPAKRASLLQHPGKAAVKASESSSSSEESSDEEE |
Parental | EDKKKKPVQKGVKPQAKTVKAPPKKAKSSDSDSDSSSEDEVPKNQKPKTTPVAAKAQAKALAKP---ARP |
EDKKKKPVQKGVKPQAKTVKAPPKKAKSSDSDSDSSSEDEVPKNQKPKTTPVAAKAQAKALAKP....RP | |
Retrocopy | EDKKKKPVQKGVKPQAKTVKAPPKKAKSSDSDSDSSSEDEVPKNQKPKTTPVAAKAQAKALAKPGIPVRP |
Parental | APKVVNGKAAGSNSSSSSSSSSSDDDSEEGKAAAVSKKVWTLISSRKETVPKKQAVAKAPVKAAATPAQK |
APKVVNGKAAG............DDDSEEGKAAAVSKK..................A..P.......... | |
Retrocopy | APKVVNGKAAGXXXXXXXXXXXXDDDSEEGKAAAVSKKT---VPKKQAVAKAPVKAAATPAQKSSSSEDS |
Parental | SSSSEDSSSEEEEEEEQKKKPMKKKPGPYSSVPPP----SVPPPKKSLGIQAPKKAAEKQQPVESSEDSS |
S..SE....EE......KKKP......P..SVPPP........PKK....Q.P....E......S.E..S | |
Retrocopy | S--SEEEEEEEQKKKPMKKKPGPYSSVPPPSVPPPKKSLGIQAPKKAAEKQQPVESSED----SSDESDS |
Parental | DESDSSSEEKKRPPAKAVISKATTKPAPAKKAAESSSDSSDSDSSDEAPAKPAS |
..........K....KA....A..K....K.A..SS.DSSDSDSSDEAPAKPAS | |
Retrocopy | SSEEEKRPPAKAVISKATTKPAPAK----KAAESSS-DSSDSDSSDEAPAKPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000010062 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017832 | 2 retrocopies | |
Homo sapiens | ENSG00000166197 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015012 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002595 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000023882 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014974 | 1 retrocopy |
retro_ttru_155 ,
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