RetrogeneDB - Retrocopy retro_ttru

	RetrogeneDB ID:	retro_ttru_1611
Retrocopy location	Organism:	*Dolphin (Tursiops truncatus)*
	Coordinates:	scaffold_60817:111..351(-)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	None
	Aliases:	None
	Status:	NOVEL
Parental gene information	Parental gene summary:
	Parental gene symbol:	ELOF1
	Ensembl ID:	ENSTTRG00000001807
	Aliases:	None
	Description:	elongation factor 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28691]

Retrocopy-Parental alignment summary:

						
>retro_ttru_1611
CGCAGAAAGTCAAAACAGAAGCCACCCCCCAAGAAGAAGATGACAGTCTCCCTAGATGCCCAGTTCACCTGCCCCTTCTG

CAACCACGAGAAGTCTTGTGACATGAAAATGGACCAGGCCCACAACACTGGAGTCATCTCTTGTACCATGTGCCTAGAAT

AATTCCAGACGCCCATCACTTATCTGTACACACCAGTGGACGTGTACAGCGATTGGATAGAGGCCTGCGAGGCAGCCAAT

ORF - retro_ttru_1611 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	83.75 %
Parental protein coverage:	96.39 %
Number of stop codons detected:	1
Number of frameshifts detected	0

Retrocopy - Parental Gene Alignment:

									ParentalRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYS
		RRKSK.KPPPKKKMT..L..QFTCPFCNHEKSCD.KMD.A.NTGVISCT.CLE.FQTPITYL..PVDVYS
RetrocopyRRKSKQKPPPKKKMTVSLDAQFTCPFCNHEKSCDMKMDQAHNTGVISCTMCLE*FQTPITYLYTPVDVYS
ParentalDWIDACEAAN
		DWI.ACEAAN
RetrocopyDWIEACEAAN

							

							Legend:
							
								*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

						

RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tursiops truncatus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_ttru_1611 retrocopy.

TSS - click to see more details

Tursiops truncatus was not studied using FANTOM5 data.

Lab - click to see more details

retro_ttru_1611 was not experimentally validated.

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000000064	1 retrocopy	retro_amel_1495,
Cavia porcellus	ENSCPOG00000020359	1 retrocopy	retro_cpor_1091,
Felis catus	ENSFCAG00000004926	1 retrocopy	retro_fcat_699,
Loxodonta africana	ENSLAFG00000001534	2 retrocopies	retro_lafr_1217, retro_lafr_771,
Macropus eugenii	ENSMEUG00000012101	1 retrocopy	retro_meug_2078,
Otolemur garnettii	ENSOGAG00000026211	1 retrocopy	retro_ogar_2878,
Ictidomys tridecemlineatus	ENSSTOG00000003687	1 retrocopy	retro_itri_1081,
Tupaia belangeri	ENSTBEG00000004812	1 retrocopy	retro_tbel_2163,
Tursiops truncatus	ENSTTRG00000001807	1 retrocopy	retro_ttru_1611 ,

Parental	RRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYS
	RRKSK.KPPPKKKMT..L..QFTCPFCNHEKSCD.KMD.A.NTGVISCT.CLE.FQTPITYL..PVDVYS
Retrocopy	RRKSKQKPPPKKKMTVSLDAQFTCPFCNHEKSCDMKMDQAHNTGVISCTMCLE*FQTPITYLYTPVDVYS

Parental	DWIDACEAAN
	DWI.ACEAAN
Retrocopy	DWIEACEAAN

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_ttru_1611