RetrogeneDB ID: retro_ttru_582

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2755:285115..285409(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: OSTC
• Ensembl ID: ENSTTRG00000003446
• Aliases: None
• Description: oligosaccharyltransferase complex subunit (non-catalytic) [Source:HGNC Symbol;Acc:24448]

Sequence

>retro_ttru_582
CCTGGGTTCCTGGCCACGGCGGCCTGCGCGCTGGTATTTTACGTCTCATCACCAGAGGATTAATTGATGACATCACTGTG
GAACCTCCCAGTGTTGGCTCCGTGACTGATGAACATGGGCCTCGGAGGCCTGCCGGTTTCTTGGCCTACAGAGCAAATGG
ACGATATACTATGAAGGACCGCAGACAGCTTCCTGTTTACAATGGGAGGTTTAGGTTTCACAATCCTGGGCCGATCCAAT
GCAGCAAACGTTCCAACACTCAATAGATTTCTTGTTCTATTCGTTGGATTTGTG

Alignment

ORF - retro_ttru_582 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.71 %
• Parental protein coverage: 66.44 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  PSAMTVYALVVVSYF-LITGGIIYDVIVEPPSVGSMTDEHGHQRPVAFLAYRVNGQYIM-EG-LASSFLF
          P......A...V.Y..LIT.G.I.D..VEPPSVGS.TDEHG..RP..FLAYR.NG.Y.M.EG..A.SFLF
Retrocopy PGFLATAACALVFYV<LITRGLIDDITVEPPSVGSVTDEHGPRRPAGFLAYRANGRYTM<EG<TADSFLF

Parental  TMGGLGFIILDRSNAPNIPKLNRFLLLFIGFV
          TMGGLGF.IL.RSNA.N.P.LNRFL.LF.GFV
Retrocopy TMGGLGFTILGRSNAANVPTLNRFLVLFVGFV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_582 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_582 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 33 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000011611	1 retrocopy	retro_btau_753,
Callithrix jacchus	ENSCJAG00000016002	3 retrocopies	retro_cjac_121, retro_cjac_2981, retro_cjac_324,
Dasypus novemcinctus	ENSDNOG00000011172	2 retrocopies	retro_dnov_12, retro_dnov_1973,
Homo sapiens	ENSG00000198856	7 retrocopies	retro_hsap_1746, retro_hsap_2013, retro_hsap_2972, retro_hsap_3598, retro_hsap_3686, retro_hsap_376, retro_hsap_4246,
Gorilla gorilla	ENSGGOG00000026873	6 retrocopies	retro_ggor_1457, retro_ggor_2060, retro_ggor_215, retro_ggor_2427, retro_ggor_370, retro_ggor_385,
Loxodonta africana	ENSLAFG00000026381	7 retrocopies	retro_lafr_1046, retro_lafr_17, retro_lafr_222, retro_lafr_231, retro_lafr_444, retro_lafr_549, retro_lafr_618,
Myotis lucifugus	ENSMLUG00000000478	2 retrocopies	retro_mluc_1366, retro_mluc_1511,
Monodelphis domestica	ENSMODG00000020599	1 retrocopy	retro_mdom_428,
Oryctolagus cuniculus	ENSOCUG00000011056	2 retrocopies	retro_ocun_1318, retro_ocun_7,
Pan troglodytes	ENSPTRG00000024222	1 retrocopy	retro_ptro_34,
Tursiops truncatus	ENSTTRG00000003446	1 retrocopy	retro_ttru_582 ,