RetrogeneDB ID: retro_ttru_706

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_3125:463026..463296(+)
• Located in intron of: ENSTTRG00000009432

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BRI3
• Ensembl ID: ENSTTRG00000015705
• Aliases: None
• Description: brain protein I3 [Source:HGNC Symbol;Acc:1109]

Sequence

>retro_ttru_706
GCGCCCTCCCAGCCACCGCCCTACCCCTACCTCCTCACAGGGCTACCCATCCACCACCCCAGGGTCTGCAACATCCACAG
TCGGAATGTCACCCGGCACCCTGCCACTTCCATCGTTGTCGTTGGAGGCTGCCCTGTCTGCAGGCTCGGGGTTCTGGAGG
ACTCCTTCACCTTCCTGGGCATCTTCTTGTCCATCGTTTTGATCCCCTTTGGGTTCATCTGCTGTTTTGCCTTGAGGAAG
CAAAGATGCCCCATCTGTGGAGCAAACTTT

Alignment

ORF - retro_ttru_706 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.44 %
• Parental protein coverage: 72. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AAAPPPPYPYLVTGLPTHHPRVYSIHSRNVTRYPANSIVVVGGCPVCRVGVLEDSFTFLGIFLAIVLFPF
          A...PPPYPYL.TGLP.HHPRV..IHSRNVTR.PA.SIVVVGGCPVCR.GVLEDSFTFLGIFL.IVL.PF
Retrocopy APSQPPPYPYLLTGLPIHHPRVCNIHSRNVTRHPATSIVVVGGCPVCRLGVLEDSFTFLGIFLSIVLIPF

Parental  GFICCFALRKRRCPNCGANF
          GFICCFALRK.RCP.CGANF
Retrocopy GFICCFALRKQRCPICGANF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_706 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_706 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000015227	1 retrocopy	retro_cjac_2527,
Homo sapiens	ENSG00000164713	3 retrocopies	retro_hsap_1095, retro_hsap_1811, retro_hsap_195,
Gorilla gorilla	ENSGGOG00000009646	1 retrocopy	retro_ggor_205,
Microcebus murinus	ENSMICG00000002888	1 retrocopy	retro_mmur_372,
Macaca mulatta	ENSMMUG00000013275	2 retrocopies	retro_mmul_1248, retro_mmul_849,
Otolemur garnettii	ENSOGAG00000000638	1 retrocopy	retro_ogar_63,
Pongo abelii	ENSPPYG00000025815	3 retrocopies	retro_pabe_1484, retro_pabe_50, retro_pabe_910,
Pan troglodytes	ENSPTRG00000019436	1 retrocopy	retro_ptro_698,
Tursiops truncatus	ENSTTRG00000015705	2 retrocopies	retro_ttru_706 , retro_ttru_91,