RetrogeneDB ID: retro_ttru_996

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_931:67255..67588(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ITGB3BP
• Ensembl ID: ENSTTRG00000007480
• Aliases: None
• Description: integrin beta 3 binding protein (beta3-endonexin) [Source:HGNC Symbol;Acc:6157]

Sequence

>retro_ttru_996
AAACAAGAGAACAAAAATGGACCATCAAATGGAAAGAGGAAAAACTGGAATCACCTCAGTATAACCAAAAGAAAGGAATC
TACTACACAAGACAATGATGAATTCATGGTGTTGCTATCCAAAGTTGAGAAATCATCAGACGAATTCATGGAAATAATGC
AAAATTTAAGTAATATACAGGCTTTGGAGGACAGTAGAGAGCTTGAAAATCCCATTGGTATCTCCCATGCATCATGTGTC
TTAAAAAGAGAAATGCAGAAAACAAAAGACCTAATGACAAAAGTAACAAAACAGAAACTATTTGAAAAGAAGAATTCAGG
ACTTCCCAACAAA

Alignment

ORF - retro_ttru_996 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.79 %
• Parental protein coverage: 62.01 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EQENKNGPSDGKRKNWNHLSITERKESTTEDNDEFMVLLSKVEKSSDEFMEIMQNLSNIQALEDSRELEN
          .QENKNGPS.GKRKNWNHLSIT.RKESTT.DNDEFMVLLSKVEKSSDEFMEIMQNLSNIQALEDSRELEN
Retrocopy KQENKNGPSNGKRKNWNHLSITKRKESTTQDNDEFMVLLSKVEKSSDEFMEIMQNLSNIQALEDSRELEN

Parental  LIGISHTSGVLKREMQKTKDLLTKVTKQKLFEKKNSGLPNK
          .IGISH.S.VLKREMQKTKDL.TKVTKQKLFEKKNSGLPNK
Retrocopy PIGISHASCVLKREMQKTKDLMTKVTKQKLFEKKNSGLPNK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_996 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_996 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000030710	1 retrocopy	retro_btau_747,
Callithrix jacchus	ENSCJAG00000016555	3 retrocopies	retro_cjac_2618, retro_cjac_3850, retro_cjac_3991,
Mus musculus	ENSMUSG00000028549	1 retrocopy	retro_mmus_1547,
Rattus norvegicus	ENSRNOG00000009116	1 retrocopy	retro_rnor_1472,
Tursiops truncatus	ENSTTRG00000007480	1 retrocopy	retro_ttru_996 ,