RetrogeneDB ID: retro_vpac_628

Retrocopy location

• Organism: Alpaca (Vicugna pacos)
• Coordinates: scaffold_84364:761..1003(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NNAT
• Ensembl ID: ENSVPAG00000006305
• Aliases: None
• Description: neuronatin [Source:HGNC Symbol;Acc:7860]

Sequence

>retro_vpac_628
GCGGCAGTGGCGGCAGCCTCGGCGGGAACTGCTCATCATCGGCTGGTACGTTTTCCGTGTGCTGCTGCAGGTGTTCCTGG
AATGCTGCATTTACTGGGTAGGATTCGCTTTTTGAAATCCTCCAAGGACATAGTCCATTGCGAGAAGTGAGGTGTTCAGG
TGCTCCCTGAAGAAGCTGACATACACTGTGTCGAGAAACGGGGGGCCAAGTGCTGGGAAAGCACCACCACCGGGCCCCCA
GT

Alignment

ORF - retro_vpac_628 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.27 %
• Parental protein coverage: 98.77 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  AAVAAASA-ELLIIGWYIFRVLLQVFLECCIYWVGFAFRDPPGTQPIARSEVFRYSLQKLAYTVSR-TGR
          AAVAAASA.ELLIIGWY.FRVLLQVFLECCIYWVGFAF..PP.T..IARSEVFR.SL.KL.YTVSR.TG.
Retrocopy AAVAAASA>ELLIIGWYVFRVLLQVFLECCIYWVGFAF*NPPRT*SIARSEVFRCSLKKLTYTVSR>TGG

Parental  HVLGERRHRAPN
          .VLG...HRAP.
Retrocopy QVLGKHHHRAPS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Vicugna pacos was not studied using RNA-Seq expression data.

ChIP-Seq

Vicugna pacos was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_vpac_628 retrocopy.

TSS

Vicugna pacos was not studied using FANTOM5 data.

Lab

retro_vpac_628 was not experimentally validated.

Homology

Retrocopy orthology:

Vicugna pacos does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000008786	1 retrocopy	retro_cfam_893,
Vicugna pacos	ENSVPAG00000006305	1 retrocopy	retro_vpac_628 ,