RetrogeneDB ID: | retro_vpac_630 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_8563:14695..15301(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A16 | ||
Ensembl ID: | ENSVPAG00000011819 | ||
Aliases: | None | ||
Description: | solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 [Source:HGNC Symbol;Acc:10986] |
Percent Identity: | 68.25 % |
Parental protein coverage: | 61.33 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 7 |
Parental | ALAAAE-PPPA-MPQAAGAGGPAARRDFYWLRSFVAGGIAGCCAKTTVAPLDRVKVLLQAHNHHYKHLGV |
ALAAA..PP...MPQAAG..GP.A.RDF.WL.SF...GIAG.CAKT.VA.LD..KVLLQAHNHHYKHLG. | |
Retrocopy | ALAAANPPPSR>MPQAAGV*GPTAGRDFSWLCSFLDRGIAGFCAKT-VALLD*AKVLLQAHNHHYKHLGI |
Parental | FSALRAVP-QKEGYLGLYKGNGAMMIR-IFPYGA-IQFMAFEHYKTLITTKLGISG-HVHRLMAGSMAGM |
F.AL.AVP..KE.YLGL.K.N.AMMI..IFPYGA.IQF.AFEH..T.ITTKLGISG..VHRLMAGS.... | |
Retrocopy | FPALCAVP<PKEEYLGL*KENVAMMIQ<IFPYGA<IQFIAFEHCRTKITTKLGISG<SVHRLMAGSTVHL |
Parental | -TAVICTYPLDMVRVRLAFQVKGEHTYKGIIHAFTTIYAKEGGFLGFYRGLM-PTILGMAPYAGVSFFTF |
.TAV.CTY...MVRV.L.FQVKG.HT..GIIHAF.TIYA.EGG...FYRGLM.....GMA....VSF.T. | |
Retrocopy | >TAVLCTYHFHMVRVCLMFQVKGGHT*TGIIHAFRTIYAQEGGLFAFYRGLM<AALVGMALHRVVSFYTV |
Parental | G |
G | |
Retrocopy | G |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013726 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015241 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017305 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002758 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000011819 | 1 retrocopy |
retro_vpac_630 ,
|