>retro_vvin_89
CTCGCCCTGGTGCACGTTAGCACCACTGATCCTTTGCCTCACCTAAGCATCAAGGACACTCCCATTGAAACTTCTTCTGC
CCAGTATATATTGCAACAATACACAACTACCTTTAGAGGATAAAAACTACAGAACTCAATTCGAAATGCTTATGCCATGG
GGAATGTGAAGATGATAGCTTTTGAGTTTGAGACTGCAACTTGGCTTTTGAAGAACTGAGATGCCTCAAAAGATGCAAAT
TTAGGTGGGTTTGTGCTCTGGTAGATGAATCCAGACATGTGGAATGTTGAACTTGCAGTTGGGGGTAGCAAGGTTTATGC
TAGCTGCAATGGCAAGCTTATCTTAAGGCATTCACCCTGGCTGGGAGCACATTCTGCAAAGGGCTGTGTTAGGCCATTGC
ACCGAGTGCTTTAGGGCCTTGATCCAAGGATCACTGCTCGCATGTTTGCTAATGCAATATGTATTGGAGAAAACAAGATC
AATAGTGAGGATTGCTTTATTATCAGGCTATGTGCTGACCCTCAGTCATTGAATGCTAGGAGTGAAGACCTAGTAGAGAT
CATAAGACATGTTTTGTTTGAGTACTTTAGCCAAAAAACGGGTCTTCTTGTTCACGTGGAGGGTTCCCATTTTACGCGCA
TCCAATCCAATGGTGGAGATATTGTTTACTAGGAAACCATAATCAATTCATTCCTAGAAGATTATAGGCTAGTTGAAGGG
ATCATGGTAGCTCACTCTGGGTGCTCAATAGTGACCCTTTTCAGGCTTGGAGAAGATGGCGGCTACAATCACCAACCTTA
CAATGCAA
ORF - retro_vvin_89 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.89 % |
Parental protein coverage: |
56.63 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | LAPVHVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKLQNSIRNAYAMGKVKMIASEFETATRVL |
| LA.VHVSTTDPLPHLSIKDTPIETSSAQYILQQYT....G.KLQNSIRNAYAMG.VKMIA.EFETAT..L |
Retrocopy | LALVHVSTTDPLPHLSIKDTPIETSSAQYILQQYTTTFRG*KLQNSIRNAYAMGNVKMIAFEFETATWLL |
|
Parental | KNRNASKDADSGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHSAKGPVRPLRRALQGL |
| KN..ASKDA..GGFVLW.MNPDMW.VELAVGGSKV.A.CNGKL..RH.PWLGAHSAKG.VRPL.R.L.GL |
Retrocopy | KN*DASKDANLGGFVLW*MNPDMWNVELAVGGSKVYASCNGKLILRHSPWLGAHSAKGCVRPLHRVL*GL |
|
Parental | DPRTTASMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSH |
| DPR.TA.MFA.A.CIGE.KIN.EDCFI..LCADPQ.L.ARSE...EIIRHVLF.YFSQKTGLLVH.E.SH |
Retrocopy | DPRITARMFANAICIGENKINSEDCFIIRLCADPQSLNARSEDLVEIIRHVLFEYFSQKTGLLVHVEGSH |
|
Parental | LTRIQSNGGDAVYWETTINSFLEDYRPVEGIMIAHSGRSIVTLFRFGE-MAMSHTKTRME |
| .TRIQSNGGD.VY.ET.INSFLEDYR.VEGIM.AHSG.SIVTLFR.GE.MA...T...M. |
Retrocopy | FTRIQSNGGDIVY*ETIINSFLEDYRLVEGIMVAHSGCSIVTLFRLGE>MAATITNLTMQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Vitis vinifera was not studied using RNA-Seq expression data.
Vitis vinifera was not studied using ChIP-Seq data.
Vitis vinifera was not studied using EST data.
Vitis vinifera was not studied using FANTOM5 data.
retro_vvin_89 was not experimentally validated.
Retrocopy orthology:
Vitis vinifera does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.