RetrogeneDB ID:

retro_zmay_44

Retrocopy
location
Organism:Maize (Zea mays)
Coordinates:10:132061474..132061678(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:GRMZM2G703445
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_zmay_44
AATGGCAACTAGGTCAGGGAACCTATGGACCCCCTCCACCATCGGGCGAAGTACCACCATCGATCATGTATGGGTATGGA
AACTATGGACCTCCTCCACCACCATATTCAAATTTATCAAACATGTATCCATCAGGACCACAGTATGTGTATGGACAAGT
TCCCGCTGCACCGATATGTTTCTCTTGCTTTGTGGATAAGTATT

ORF - retro_zmay_44 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.86 %
Parental protein coverage: 73.68 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalNGNRVKEPMDPLYHQAKHHHRSCTGMETMDLLHHHIQIYQICIHRDHNMGMDKFPLHRSITISMTDWINI
NGN.V.EPMDPL.H.AK.HHRSC.GMETMDLLHHHIQIYQ.CIH.DH.M.MDKFPLHR........WI.I
RetrocopyNGN*VREPMDPLHHRAKYHHRSCMGMETMDLLHHHIQIYQTCIHQDHSMCMDKFPLHRYVSLAL--WISI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Zea mays was not studied using RNA-Seq expression data.
Zea mays was not studied using ChIP-Seq data.
Zea mays was not studied using EST data.
Zea mays was not studied using FANTOM5 data.
retro_zmay_44 was not experimentally validated.

Retrocopy orthology:
Zea mays does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Zea mays GRMZM2G703445 2 retrocopies
retro_zmay_35, retro_zmay_44 ,



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