RetrogeneDB ID: retro_zmay_5

Retrocopy location

• Organism: Maize (Zea mays)
• Coordinates: 1:9558772..9559207(-)
• Located in intron of: GRMZM2G113174

Retrocopy information

• Ensembl ID: GRMZM2G113239
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: GRMZM2G146818
• Aliases: None
• Description: None

Sequence

>retro_zmay_5
ATGGCGATTGGTTCTCTCATCGCCTCTACTTTCGCCAGATCTAGCCATGCCCTCCCCGCTGCCGCCGCTTCGGCCATCTC
TCAGGCTCCCAGATCCCAGCACACCGCATCTCCTCTGCTCTCCGGCCTTGGAGCAGCGGCTCGTGCTTTCAGCTCAAGGG
CTCTATGGAAGGGAGCATTCGTTGACGCTTTCCTGTCTAGAATTAAGAAGAACAGAGAAAATATGAATGGCAAGAAGATT
TGGTCTCGTAGATCCTCTATTTTGCCGGAATTTGTTGGTTCCTCTGTGCTCATTTACAATGGGAAAACTCATGTCCGGTG
CAAGATCACTGAAGGGAAGGTTGGCCATAAATTTGGAGAGTTTGCTTTTACACGGAGACGAAGGCCCCATCGAACAATGA
CAGGAAAGGGAAATCAAGGAAAGGCAAGAAAGTAA

Alignment

ORF - retro_zmay_5 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 100. %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAIGSLIASTFARSSHALPAAAASAISQAPRSQHTASPLLSGLGAAARAFSSRALWKGAFVDAFLSRIKK
          MAIGSLIASTFARSSHALPAAAASAISQAPRSQHTASPLLSGLGAAARAFSSRALWKGAFVDAFLSRIKK
Retrocopy MAIGSLIASTFARSSHALPAAAASAISQAPRSQHTASPLLSGLGAAARAFSSRALWKGAFVDAFLSRIKK

Parental  NRENMNGKKIWSRRSSILPEFVGSSVLIYNGKTHVRCKITEGKVGHKFGEFAFTRRRRPHRTMTGKGNQG
          NRENMNGKKIWSRRSSILPEFVGSSVLIYNGKTHVRCKITEGKVGHKFGEFAFTRRRRPHRTMTGKGNQG
Retrocopy NRENMNGKKIWSRRSSILPEFVGSSVLIYNGKTHVRCKITEGKVGHKFGEFAFTRRRRPHRTMTGKGNQG

Parental  KARK
          KARK
Retrocopy KARK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Zea mays was not studied using RNA-Seq expression data.

ChIP-Seq

Zea mays was not studied using ChIP-Seq data.

EST

Zea mays was not studied using EST data.

TSS

Zea mays was not studied using FANTOM5 data.

Lab

retro_zmay_5 was not experimentally validated.

Homology

Retrocopy orthology:

Zea mays does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Zea mays	GRMZM2G146818	1 retrocopy	retro_zmay_5 ,