RetrogeneDB ID: | retro_zmay_77 | ||
Retrocopy location | Organism: | Maize (Zea mays) | |
| Coordinates: | 7:163004489..163004846(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | GRMZM2G108919 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_zmay_77
GACGTTGATATGGCCGCCGGGGACGACGCGACGAAGCTTCAGGAGCTTGACGAGATGAAGCGCGAGCTGAAGGAGATGGA
GGAGGAGGAGGCCGCCCTCCGCGATATGCAGGCCAAGGTTGCCAAGGAGATGCAAGGAGGTGACCCTAGTATATCTACAA
CTGAAGTGAAGGAGCAGGTAGATGTGTGGTATGTGTTTGTTGGAAATGTTGATTATGCTTGCACCCCATAAGTACAGCAG
CATTTCCAAGCTTGTGGAACTGTCAACAAGGTGACAATCTTGACTGACAAGTTTGGGCAGCCAAAAGATTTTGCTTATGT
TGAATTTCTAGAACAAAAGGTTGTCCAGGAAGCTCTG
ORF - retro_zmay_77 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.78 % |
| Parental protein coverage: | 57.08 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | DVDMAAAGDDAAKLQELDEMKRKLKEMEEEAAALRDMQAKVAKEMQGGDPSISTAEAKEQVDARSVYVGN |
| DVDMAA.GDDA.KLQELDEMKR.LKEMEEE.AALRDMQAKVAKEMQGGDPSIST.E.KEQVD...V.VGN | |
| Retrocopy | DVDMAA-GDDATKLQELDEMKRELKEMEEEEAALRDMQAKVAKEMQGGDPSISTTEVKEQVDVWYVFVGN |
| Parental | VDYACTPEEVQQHFQACGTVNRVTILTDKFGQPKGFAYVEFLEQEAVQEAL |
| VDYACTP..VQQHFQACGTVN.VTILTDKFGQPK.FAYVEFLEQ..VQEAL | |
| Retrocopy | VDYACTP-*VQQHFQACGTVNKVTILTDKFGQPKDFAYVEFLEQKVVQEAL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Zea mays was not studied using RNA-Seq expression data.
Zea mays was not studied using ChIP-Seq data.
Zea mays was not studied using EST data.
Zea mays was not studied using FANTOM5 data.
retro_zmay_77 was not experimentally validated.
Retrocopy orthology:
Zea mays does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Zea mays | GRMZM2G108919 | 1 retrocopy |
retro_zmay_77 ,
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