Parental gene: | CCT2, ENSCAFG00000000432 |
| Aliases: | None |
| Description: | chaperonin containing TCP1, subunit 2 (beta) [Source:HGNC Symbol;Acc:1615] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 10:11561450..11578297(+) |
>ENSCAFG00000000432
CAGGCGTCCCTTTCCCTCGCACCTGTGAACATCTTCAAGGCTGGAGCTGATGAAGAGAGAGCGGAGACGGCTCGGCTGTC
GTCTTTTATTGGTGCCATTGCTATTGGAGACTTGGTGAAGAGCACCCTAGGACCTAAGGGCATGGATAAAATTCTATTAA
GCAGTGGACGAGATGCTTCCCTTATGGTAACTAATGATGGTGCAACTATTCTAAAAAACATCGGTGTGGACAATCCAGCA
GCTAAAGTTTTAGTTGATATGTCAAGGGTTCAAGATGATGAAGTTGGTGATGGTACTACCTCTGTTACTGTGCTAGCAGC
AGAATTACTAAGGGAAGCAGAAACTTTGATTGCAAAAAAGATTCACCCACAGACCATCATTGCGGGTTGGAGAGAAGCCA
CAAAGGCAGCAAGACAGGCTCTGTTGAATTCTGCAGTTGATCATGGTTCTGACGAAGTTAAGTTCCGTCAAGATTTAATG
AACATTGCGGGAACAACATTGTCCTCAAAACTTCTTACTCATCACAAAGACCACTTTACTCAGTTAGCCGTAGAAGCTGT
TCTCAGACTGAAAGGTTCTGGTAATCTGGAGGCAATTCATGTCATCAAGAAGCTAGGAGGAAGTCTGGCAGATTCCTATT
TAGATGAAGGCTTTCTGTTGGATAAAAAAATTGGAGTAAATCAACCAAAGCGAATTGAAAATGCTAAAATTCTCATTGCA
AATACTGGTATGGATACAGACAAAATAAAGATATTTGGTTCCAGAGTAAGAGTTGATTCTACAGCAAAGGTTGCTGAAAT
AGAACATGCCGAAAAGGAAAAAATGAAGGAGAAAGTTGAACGTATTCTTAAGCATGGGATAAATTGCTTTATTAACAGGC
AGTTAATTTACAATTACCCTGAACAGCTCTTTGGTGCTGCTGGTGTTATGGCTATCGAACATGCAGATTTTGCAGGTGTG
GAACGCCTAGCTCTTGTTACAGGTGGTGAAATTGCCTCTACCTTTGACCACCCAGAACTAGTGAAGCTTGGAAGTTGCAA
GCTTATTGAGGAAGTCATGATTGGAGAAGATAAACTTATCCACTTTTCTGGGGTAGCCCTTGGTGAAGCTTGTACCATTG
TTCTGCGTGGTGCCACTCAACAGATTTTAGATGAAGCAGAAAGATCTTTGCATGATGCTCTTTGTGTTCTTGCCCAAACT
GTGAAGGATTCTAGAACAGTGTATGGAGGAGGCTGTTCTGAGATGCTGATGGCTCATGCTGTGACACAGCTTGCCAGTAG
AACACCAGGCAAAGAAGCTGTTGCGATGGAGTCTTATGCTAAAGCACTGAGAATGCTGCCAACTATCATAGCTGATAACG
CAGGCTACGACAGTGCAGACCTGGTGGCCCAGCTGCGAGCTGCCCACAGTGAAGGCAACACAACTGCTGGCCTGGATATG
AAGGAAGGTACCATCGGAGATATGGCAGTACTGGGTATAACAGAAAGTTTCCAAGTGAAGCGACAAGTTCTTTTGAGTGC
AGCTGAAGCAGCAGAGGTGATTCTGCGTGTGGACAACATTATCAAAGCAGCACCAAGGAAACGTGTCCCTGATCACCACC
CCTGTTAA
CAGGCGTCCCTTTCCCTCGCACCTGTGAACATCTTCAAGGCTGGAGCTGATGAAGAGAGAGCGGAGACGGCTCGGCTGTC
GTCTTTTATTGGTGCCATTGCTATTGGAGACTTGGTGAAGAGCACCCTAGGACCTAAGGGCATGGATAAAATTCTATTAA
GCAGTGGACGAGATGCTTCCCTTATGGTAACTAATGATGGTGCAACTATTCTAAAAAACATCGGTGTGGACAATCCAGCA
GCTAAAGTTTTAGTTGATATGTCAAGGGTTCAAGATGATGAAGTTGGTGATGGTACTACCTCTGTTACTGTGCTAGCAGC
AGAATTACTAAGGGAAGCAGAAACTTTGATTGCAAAAAAGATTCACCCACAGACCATCATTGCGGGTTGGAGAGAAGCCA
CAAAGGCAGCAAGACAGGCTCTGTTGAATTCTGCAGTTGATCATGGTTCTGACGAAGTTAAGTTCCGTCAAGATTTAATG
AACATTGCGGGAACAACATTGTCCTCAAAACTTCTTACTCATCACAAAGACCACTTTACTCAGTTAGCCGTAGAAGCTGT
TCTCAGACTGAAAGGTTCTGGTAATCTGGAGGCAATTCATGTCATCAAGAAGCTAGGAGGAAGTCTGGCAGATTCCTATT
TAGATGAAGGCTTTCTGTTGGATAAAAAAATTGGAGTAAATCAACCAAAGCGAATTGAAAATGCTAAAATTCTCATTGCA
AATACTGGTATGGATACAGACAAAATAAAGATATTTGGTTCCAGAGTAAGAGTTGATTCTACAGCAAAGGTTGCTGAAAT
AGAACATGCCGAAAAGGAAAAAATGAAGGAGAAAGTTGAACGTATTCTTAAGCATGGGATAAATTGCTTTATTAACAGGC
AGTTAATTTACAATTACCCTGAACAGCTCTTTGGTGCTGCTGGTGTTATGGCTATCGAACATGCAGATTTTGCAGGTGTG
GAACGCCTAGCTCTTGTTACAGGTGGTGAAATTGCCTCTACCTTTGACCACCCAGAACTAGTGAAGCTTGGAAGTTGCAA
GCTTATTGAGGAAGTCATGATTGGAGAAGATAAACTTATCCACTTTTCTGGGGTAGCCCTTGGTGAAGCTTGTACCATTG
TTCTGCGTGGTGCCACTCAACAGATTTTAGATGAAGCAGAAAGATCTTTGCATGATGCTCTTTGTGTTCTTGCCCAAACT
GTGAAGGATTCTAGAACAGTGTATGGAGGAGGCTGTTCTGAGATGCTGATGGCTCATGCTGTGACACAGCTTGCCAGTAG
AACACCAGGCAAAGAAGCTGTTGCGATGGAGTCTTATGCTAAAGCACTGAGAATGCTGCCAACTATCATAGCTGATAACG
CAGGCTACGACAGTGCAGACCTGGTGGCCCAGCTGCGAGCTGCCCACAGTGAAGGCAACACAACTGCTGGCCTGGATATG
AAGGAAGGTACCATCGGAGATATGGCAGTACTGGGTATAACAGAAAGTTTCCAAGTGAAGCGACAAGTTCTTTTGAGTGC
AGCTGAAGCAGCAGAGGTGATTCTGCGTGTGGACAACATTATCAAAGCAGCACCAAGGAAACGTGTCCCTGATCACCACC
CCTGTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 74 .95 RPM |
| SRP017611_kidney | 207 .22 RPM |
| SRP017611_liver | 62 .36 RPM |
| SRP012049_cerebellum | 93 .70 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000006098 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000001715 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000006688 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000008364 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_1969 | 92.93 | 58.13 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_2166 | 94.65 | 65.98 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000000432 retrocopies