RetrogeneDB ID: | retro_mluc_2248 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430146:558902..559793(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCT2 | ||
Ensembl ID: | ENSMLUG00000008364 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.5 % |
Parental protein coverage: | 55.6 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 3 |
Parental | ASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATIL |
ASLSLA.VNIF.AGADE.......L......I.IG.LV.STLGPKGMD.IL.SS..DASLMV...GATIL | |
Retrocopy | ASLSLALVNIFQAGADEDSRNS*SLFLY-WSISIGVLV*STLGPKGMDTILGSSE*DASLMVASVGATIL |
Parental | -KNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIA-KKIHPQTIIAGWREATKAARQ |
.K.IGVDN.A.KVLV.MSRVQDD.VGDGTTSVTVLAAE.LREA...I..K....QTII.GWREATKAA.Q | |
Retrocopy | <KSIGVDNSASKVLVVMSRVQDDKVGDGTTSVTVLAAE*LREAGYFIS<KRFYHQTIIVGWREATKAAKQ |
Parental | ALLDSAVDHGSDEDKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSL |
AL..SAVDHGS.EDKF.QDLM..AGTTLSSK.LTHHKDHF.KLAVE..LRLK.SGNLEAIHVIKKL.GSL | |
Retrocopy | ALFNSAVDHGSNEDKFYQDLMSMAGTTLSSKHLTHHKDHFIKLAVETFLRLKCSGNLEAIHVIKKL*GSL |
Parental | VDSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGS-RVRVDSTAKVAEIEQAEKEK-MKE |
VDSYLDE.FLLD.KIGVNQPK.I.N.KI.I.NTGMDTDKIKIFGS...RVDS.AKVAEI.QAE..K..K. | |
Retrocopy | VDSYLDEVFLLD*KIGVNQPKGIDNSKIIIKNTGMDTDKIKIFGS<HARVDSIAKVAEIDQAENKKIVKK |
Parental | KVERILKHGINCFINRQLIYNY |
KVE.ILKHGINCFINRQLIYN. | |
Retrocopy | KVECILKHGINCFINRQLIYNW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000432 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000006098 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001715 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000006688 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008364 | 1 retrocopy |
retro_mluc_2248 ,
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