Parental gene: | ENSCAFG00000001785 |
| Aliases: | None |
| Description: | tRNA-splicing ligase RtcB homolog [Source:UniProtKB/TrEMBL;Acc:E2RCD6] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 10:31010940..31033207(+) |
>ENSCAFG00000001785
ATGAGTCGCAGCTATAATGATGAGCTACAGTTCTTGGAGAAGATCAATAAAAACTGCTGGAGAATCAAGAAGGGCTTCGT
GCCCAACATGCAGGTGGAAGGCGTTTTCTATGTGAATGATGCTCTGGAAAAATTAATGTTTGAGGAATTAAGAAATGCCT
GTCGAGGTGGTGGTGTTGGTGGCTTCCTACCAGCCATGAAACAAATTGGCAACGTGGCAGCCCTGCCTGGGATTGTTCAT
AGATCTATTGGGCTTCCTGATGTCCATTCAGGTTATGGGTTTGCTATTGGGAATATGGCAGCCTTCGATATGAATGACCC
CGAAGCAGTGGTATCCCCAGGTGGTGTCGGATTTGACATCAACTGTGGTGTCCGCTTGCTAAGAACCAATTTAGATGAAA
GCGATGTCCAGCCTGTGAAGGAGCAGCTTGCCCAAGCTATGTTTGACCATATTCCTGTTGGAGTGGGATCAAAAGGTGTC
ATCCCCATGAGTGCCAAAGACTTGGAGGAGGCCTTAGAGATGGGTGTGGATTGGTCCCTGAGGGAAGGCTATGCCTGGGC
TGAGGACAAGGAGCACTGTGAGGAGTACGGCAGGATGTTGCAGGCCGACCCCAATAAAGTCTCTGCAAGGGCTAAGAAAA
GAGGCCTTCCTCAGTTGGGAACCCTGGGAGCAGGCAACCACTATGCAGAAATCCAGGTTGTGGATGAGATTTTCAATGAG
TATGCTGCTAAGAAAATGGGCATCGACCATAAGGGACAAGTGTGTGTGATGATCCACAGTGGAAGCAGAGGCTTGGGCCA
CCAAGTAGCCACAGATGCACTGGTAGCTATGGAAAAAGCCATGAAAAGAGACAAGATTATAGTCAACGACCGGCAGTTGG
CTTGTGCTCGGATTGCTTCCCCAGAGGGTCAGGACTACCTGAAGGGGATGGCAGCTGCTGGGAACTATGCCTGGGTCAAC
CGCTCTTCCATGACCTTCTTAACCCGTCAGGCTTTTGCCAAGGTCTTCAACACAACCCCTGATGACTTGGATCTACATGT
GATCTATGATGTTTCTCACAATATTGCCAAAGTAGAACAGCACGTGGTGGATGGAAAGGAACGGACACTGTTGGTACACA
GGAAGGGATCCACTCGGGCTTTCCCTCCTCACCATCCCCTCATTGCTGTGGATTACCAACTCACTGGACAGCCGGTGCTC
ATTGGTGGCACCATGGGCACCTGCAGTTACGTTCTTACGGGCACCGAGCAGGGCATGACGGAGACCTTTGGGACCACTTG
CCATGGAGCGGGCCGTGCATTGTCCCGAGCAAAATCTCGTCGTAATTTAGATTTCCAGGATGTCTTGGACAAACTGGCAG
ATATGGGAATCGCAATCCGAGTTGCCTCACCCAAACTGGTTATGGAAGAGGCTCCTGAGTCCTATAAGAATGTGACGGAT
GTGGTGAACACCTGCCATGATGCTGGAATCAGCAAGAAGGCCATTAAACTGAGACCGATTGCTGTGATCAAAGGATAG
ATGAGTCGCAGCTATAATGATGAGCTACAGTTCTTGGAGAAGATCAATAAAAACTGCTGGAGAATCAAGAAGGGCTTCGT
GCCCAACATGCAGGTGGAAGGCGTTTTCTATGTGAATGATGCTCTGGAAAAATTAATGTTTGAGGAATTAAGAAATGCCT
GTCGAGGTGGTGGTGTTGGTGGCTTCCTACCAGCCATGAAACAAATTGGCAACGTGGCAGCCCTGCCTGGGATTGTTCAT
AGATCTATTGGGCTTCCTGATGTCCATTCAGGTTATGGGTTTGCTATTGGGAATATGGCAGCCTTCGATATGAATGACCC
CGAAGCAGTGGTATCCCCAGGTGGTGTCGGATTTGACATCAACTGTGGTGTCCGCTTGCTAAGAACCAATTTAGATGAAA
GCGATGTCCAGCCTGTGAAGGAGCAGCTTGCCCAAGCTATGTTTGACCATATTCCTGTTGGAGTGGGATCAAAAGGTGTC
ATCCCCATGAGTGCCAAAGACTTGGAGGAGGCCTTAGAGATGGGTGTGGATTGGTCCCTGAGGGAAGGCTATGCCTGGGC
TGAGGACAAGGAGCACTGTGAGGAGTACGGCAGGATGTTGCAGGCCGACCCCAATAAAGTCTCTGCAAGGGCTAAGAAAA
GAGGCCTTCCTCAGTTGGGAACCCTGGGAGCAGGCAACCACTATGCAGAAATCCAGGTTGTGGATGAGATTTTCAATGAG
TATGCTGCTAAGAAAATGGGCATCGACCATAAGGGACAAGTGTGTGTGATGATCCACAGTGGAAGCAGAGGCTTGGGCCA
CCAAGTAGCCACAGATGCACTGGTAGCTATGGAAAAAGCCATGAAAAGAGACAAGATTATAGTCAACGACCGGCAGTTGG
CTTGTGCTCGGATTGCTTCCCCAGAGGGTCAGGACTACCTGAAGGGGATGGCAGCTGCTGGGAACTATGCCTGGGTCAAC
CGCTCTTCCATGACCTTCTTAACCCGTCAGGCTTTTGCCAAGGTCTTCAACACAACCCCTGATGACTTGGATCTACATGT
GATCTATGATGTTTCTCACAATATTGCCAAAGTAGAACAGCACGTGGTGGATGGAAAGGAACGGACACTGTTGGTACACA
GGAAGGGATCCACTCGGGCTTTCCCTCCTCACCATCCCCTCATTGCTGTGGATTACCAACTCACTGGACAGCCGGTGCTC
ATTGGTGGCACCATGGGCACCTGCAGTTACGTTCTTACGGGCACCGAGCAGGGCATGACGGAGACCTTTGGGACCACTTG
CCATGGAGCGGGCCGTGCATTGTCCCGAGCAAAATCTCGTCGTAATTTAGATTTCCAGGATGTCTTGGACAAACTGGCAG
ATATGGGAATCGCAATCCGAGTTGCCTCACCCAAACTGGTTATGGAAGAGGCTCCTGAGTCCTATAAGAATGTGACGGAT
GTGGTGAACACCTGCCATGATGCTGGAATCAGCAAGAAGGCCATTAAACTGAGACCGATTGCTGTGATCAAAGGATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 43 .11 RPM |
| SRP017611_kidney | 71 .19 RPM |
| SRP017611_liver | 24 .22 RPM |
| SRP012049_cerebellum | 52 .62 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000011070 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000007803 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000008270 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_13 | 95.64 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_977 | 88.64 | 78.02 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000001785 retrocopies