Parental gene: | SF3B4, ENSCAFG00000011617 |
| Aliases: | None |
| Description: | splicing factor 3b, subunit 4, 49kDa [Source:HGNC Symbol;Acc:10771] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 17:59209206..59213991(-) |
>ENSCAFG00000011617
ATGGCGGCCGGCCCGATCTCCGAGCGGAACCAGGATGCCACTGTCTACGTCGGGGGACTGGATGAGAAGGTTAGCGAACC
CCTGCTGTGGGAGCTTTTTCTCCAGGCAGGGCCAGTAGTCAACACCCACATGCCAAAGGATAGAGTCACAGGTCAGCACC
AAGGCTATGGCTTTGTGGAATTCCTGAGTGAGGAAGATGCTGACTATGCCATTAAGATCATGAACATGATCAAACTATAT
GGGAAGCCAATACGAGTGAACAAGGCATCGGCTCACAACAAGAACCTGGACGTGGGGGCCAACATTTTCATTGGCAATCT
GGACCCAGAAATTGATGAGAAGCTGCTTTATGATACTTTCAGCGCCTTCGGGGTCATCTTACAAACCCCTAAGATTATGC
GGGACCCTGATACAGGCAACTCCAAAGGTTATGCCTTTATTAATTTTGCTTCATTTGACGCTTCGGATGCAGCTATTGAG
GCCATGAATGGGCAGTATCTCTGTAATCGCCCCATTACTGTGTCCTATGCCTTCAAGAAGGACTCGAAAGGGGAGCGCCA
CGGCTCAGCAGCTGAACGACTTCTAGCAGCCCAGAACCCACTCTCCCAGGCTGACCGCCCTCATCAGCTGTTTGCAGATG
CACCCCCTCCGCCTTCAGCCCCCAATCCTGTCGTATCATCATTGGGGTCTGGGCTCCCGCCACCAGGCATGCCTCCTCCT
GGGTCCTTCCCACCCCCGGTGCCGCCTCCTGGAGCCCTTCCACCCGGGATACCCCCAGCCATGCCCCCGCCACCTATGCC
TCCCGGTGCTGGAGGACACGGTCCACCATCAGCAGGAACCCCAGGGGCTGGACATCCTGGACATGGACACTCGCATCCTC
ACCCATTCCCACCAAGTGGGATGCCCCATCCAGGGATGTCTCAGATGCAGCTGGCCCACCATGGCCCTCATGGCCTAGGA
CACCCACATGCTGGGCCCCCAGGCTCTGGGGGGCAGCCACCACCCCGACCACCACCTGGAATGCCTCATCCTGGACCTCC
TCCAATGGGCTTGCCCCCTCGAGGGCCTCCGTTTGGATCTCCCATGGGTCACCCAGGTCCCATGCCTCCACATGGGATGC
GTGGACCTCCTCCACTAATGCCTCCTCATGGATACACTGGGCCTCCACGACCCCCACCCTACGGCTACCAGCGGGGGCCC
CTGCCTCCACCCAGACCCACCCCCCGGCCTCCAGTTCCCCCGCGTGGCCCACTCCGAGGCCCTCTTCCTCAATAA
ATGGCGGCCGGCCCGATCTCCGAGCGGAACCAGGATGCCACTGTCTACGTCGGGGGACTGGATGAGAAGGTTAGCGAACC
CCTGCTGTGGGAGCTTTTTCTCCAGGCAGGGCCAGTAGTCAACACCCACATGCCAAAGGATAGAGTCACAGGTCAGCACC
AAGGCTATGGCTTTGTGGAATTCCTGAGTGAGGAAGATGCTGACTATGCCATTAAGATCATGAACATGATCAAACTATAT
GGGAAGCCAATACGAGTGAACAAGGCATCGGCTCACAACAAGAACCTGGACGTGGGGGCCAACATTTTCATTGGCAATCT
GGACCCAGAAATTGATGAGAAGCTGCTTTATGATACTTTCAGCGCCTTCGGGGTCATCTTACAAACCCCTAAGATTATGC
GGGACCCTGATACAGGCAACTCCAAAGGTTATGCCTTTATTAATTTTGCTTCATTTGACGCTTCGGATGCAGCTATTGAG
GCCATGAATGGGCAGTATCTCTGTAATCGCCCCATTACTGTGTCCTATGCCTTCAAGAAGGACTCGAAAGGGGAGCGCCA
CGGCTCAGCAGCTGAACGACTTCTAGCAGCCCAGAACCCACTCTCCCAGGCTGACCGCCCTCATCAGCTGTTTGCAGATG
CACCCCCTCCGCCTTCAGCCCCCAATCCTGTCGTATCATCATTGGGGTCTGGGCTCCCGCCACCAGGCATGCCTCCTCCT
GGGTCCTTCCCACCCCCGGTGCCGCCTCCTGGAGCCCTTCCACCCGGGATACCCCCAGCCATGCCCCCGCCACCTATGCC
TCCCGGTGCTGGAGGACACGGTCCACCATCAGCAGGAACCCCAGGGGCTGGACATCCTGGACATGGACACTCGCATCCTC
ACCCATTCCCACCAAGTGGGATGCCCCATCCAGGGATGTCTCAGATGCAGCTGGCCCACCATGGCCCTCATGGCCTAGGA
CACCCACATGCTGGGCCCCCAGGCTCTGGGGGGCAGCCACCACCCCGACCACCACCTGGAATGCCTCATCCTGGACCTCC
TCCAATGGGCTTGCCCCCTCGAGGGCCTCCGTTTGGATCTCCCATGGGTCACCCAGGTCCCATGCCTCCACATGGGATGC
GTGGACCTCCTCCACTAATGCCTCCTCATGGATACACTGGGCCTCCACGACCCCCACCCTACGGCTACCAGCGGGGGCCC
CTGCCTCCACCCAGACCCACCCCCCGGCCTCCAGTTCCCCCGCGTGGCCCACTCCGAGGCCCTCTTCCTCAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 20 .96 RPM |
| SRP017611_kidney | 23 .51 RPM |
| SRP017611_liver | 8 .77 RPM |
| SRP012049_cerebellum | 40 .36 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000012495 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000013514 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000000793 | ortholog_one2one | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000008267 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000008963 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000143368 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000004761 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000007256 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000005563 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000004614 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000000912 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000001243 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000014171 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000021181 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000000684 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_585 | 85.65 | 54.72 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_711 | 85.50 | 95.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_729 | 94.04 | 75.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000011617 retrocopies