Parental gene:

SF3B4, ENSG00000143368

Aliases:SF3B4, AFD1, Hsh49, SAP49, SF3b49
Description:splicing factor 3b, subunit 4, 49kDa [Source:HGNC Symbol;Acc:10771]
Organism:Human (Homo sapiens)
Coordinates:1:149895208..149900236(-)


>ENSG00000143368
ATGGCTGCCGGGCCGATCTCCGAGCGGAATCAGGATGCCACTGTGTACGTGGGGGGCCTGGATGAGAAGGTTAGTGAACC
GCTGCTGTGGGAACTGTTTCTCCAGGCTGGACCAGTAGTCAACACCCACATGCCAAAGGATAGAGTCACTGGCCAGCACC
AAGGCTATGGCTTTGTGGAATTCTTGAGTGAGGAAGATGCTGACTATGCCATTAAGATCATGAACATGATCAAACTCTAT
GGGAAGCCAATACGGGTGAACAAAGCATCAGCTCACAACAAAAACCTGGATGTAGGGGCCAACATTTTCATTGGGAACCT
GGACCCTGAGATTGATGAGAAGTTGCTTTATGATACTTTCAGCGCCTTTGGGGTCATCTTACAAACCCCCAAAATTATGC
GGGACCCTGACACAGGCAACTCCAAAGGTTATGCCTTTATTAATTTTGCTTCATTTGATGCTTCGGATGCAGCAATTGAA
GCCATGAATGGGCAGTACCTCTGTAACCGTCCTATCACCGTATCTTATGCCTTCAAGAAGGACTCCAAGGGTGAGCGCCA
TGGCTCAGCAGCCGAACGACTTCTGGCAGCTCAGAACCCGCTCTCCCAGGCTGATCGCCCTCATCAGCTGTTTGCAGATG
CACCTCCTCCACCCTCTGCTCCCAATCCTGTGGTATCATCATTGGGGTCTGGGCTTCCTCCACCAGGCATGCCTCCTCCT
GGCTCCTTCCCACCCCCAGTGCCACCTCCTGGAGCCCTCCCACCTGGGATACCCCCAGCCATGCCCCCACCACCTATGCC
TCCTGGGGCTGCAGGACATGGCCCCCCATCGGCAGGAACCCCAGGGGCAGGACATCCTGGTCATGGACACTCACATCCTC
ACCCATTCCCACCGGGTGGGATGCCCCATCCAGGGATGTCTCAGATGCAGCTTGCACACCATGGCCCTCATGGCTTAGGA
CATCCCCACGCTGGACCCCCAGGCTCTGGGGGCCAGCCACCGCCCCGACCACCACCTGGAATGCCTCATCCTGGACCTCC
TCCAATGGGCATGCCCCCCCGAGGGCCTCCATTCGGATCTCCCATGGGTCACCCAGGTCCTATGCCTCCGCATGGTATGC
GTGGACCTCCTCCACTGATGCCCCCCCATGGATACACTGGCCCTCCACGACCCCCACCCTATGGCTACCAGCGGGGGCCT
CTCCCTCCACCCAGACCCACTCCCCGGCCACCAGTTCCCCCTCGAGGCCCACTTCGAGGCCCTCTCCCTCAGTAA

Library Parental gene expression (RPM)
bodymap2_liver 13 .27 RPM
bodymap2_lung 27 .13 RPM
bodymap2_breast 23 .29 RPM
bodymap2_adipose 26 .46 RPM
bodymap2_adrenal 37 .93 RPM
bodymap2_skeletal_muscle 16 .21 RPM
bodymap2_thyroid 30 .79 RPM
bodymap2_prostate 35 .06 RPM
bodymap2_colon 18 .83 RPM
bodymap2_testis 58 .84 RPM
bodymap2_brain 14 .28 RPM
bodymap2_heart 13 .24 RPM
bodymap2_white_blood_cells 59 .20 RPM
bodymap2_lymph_node 22 .86 RPM
bodymap2_ovary 53 .94 RPM
bodymap2_kidney 29 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012495 ortholog_one2one 2 retrogenes
retro_btau_1385, retro_btau_592,
Canis familiaris ENSCAFG00000011617 ortholog_one2one 3 retrogenes
retro_cfam_585, retro_cfam_711, retro_cfam_729,
Callithrix jacchus ENSCJAG00000000793 ortholog_one2one 3 retrogenes
retro_cjac_1297, retro_cjac_1909, retro_cjac_638,
Cavia porcellus ENSCPOG00000008267 ortholog_one2one 1 retrogene
retro_cpor_234,
Echinops telfairi ENSETEG00000008963 ortholog_one2one 1 retrogene
retro_etel_1310,
Homo sapiens ENSG00000076053 within_species_paralog 1 retrogene
retro_hsap_2283,
Gorilla gorilla ENSGGOG00000004761 ortholog_one2one 1 retrogene
retro_ggor_1056,
Macaca mulatta ENSMMUG00000007256 ortholog_one2one 1 retrogene
retro_mmul_2191,
Mustela putorius furo ENSMPUG00000005563 ortholog_one2one 2 retrogenes
retro_mputfur_1105, retro_mputfur_648,
Oryctolagus cuniculus ENSOCUG00000004614 ortholog_one2one 1 retrogene
retro_ocun_1239,
Pongo abelii ENSPPYG00000000912 ortholog_one2one 1 retrogene
retro_pabe_1124,
Pan troglodytes ENSPTRG00000001243 ortholog_one2one 1 retrogene
retro_ptro_930,
Pteropus vampyrus ENSPVAG00000014171 ortholog_one2one 1 retrogene
retro_pvam_931,
Rattus norvegicus ENSRNOG00000021181 ortholog_one2one 1 retrogene
retro_rnor_2350,
Ictidomys tridecemlineatus ENSSTOG00000000684 ortholog_one2one 2 retrogenes
retro_itri_1153, retro_itri_487,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1356 91.10 100.00
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Download FASTA sequences of all ENSG00000143368 retrocopies