Parental gene: | SMARCD2, ENSCAFG00000012708 |
| Aliases: | None |
| Description: | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Source:HGNC Symbol;Acc:11107] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 9:11788556..11797732(-) |
>ENSCAFG00000012708
ATGTCGGGCCGTGGCGCGGGCGGGTTCCCGCTGCCTCCGCTGAGTCCTGGTGGCGGCGCCGTTGCCGCGGCCCTGGGAGC
GCCGCCTCCGCCCGCGGGACCCGGCATGCTGCCGGGACCGGCGCTCAGGGGGCCAGGGCCGGCTGGCGGCGTGGGGGGCC
CCGGGGCCGCCGCCTTCCGCCCCATGGGCCCCGCGGGCCCCGCGGCGCAGTACCAGCGGCCTGGTATGTCACCGGGGAGC
CGGATGCCCATGGCTGGCTTGCAGGTGGGACCCCCCGCCGGCTCCCCATTTGGCACAGCTGCTCCACTTCGACCTGGCAT
GCCACCCACCATGATGGACCCATTCCGAAAACGCCTGCTGGTGCCCCAGGCCCAGCCCCCAATGCCCGCCCAGCGCCGGG
GGCTAAAGAGGAGGAAGATGGCAGATAAGGTTCTACCTCAGCGAATTCGGGAGCTTGTCCCAGAGTCTCAGGCGTACATG
GATCTCTTGGCTTTTGAGCGGAAGCTGGACCAGACCATTGCCCGAAAGCGGATGGAGATCCAAGAGGCCATCAAAAAGCC
TCTGACGCAAAAACGAAAGCTGCGCATCTATATTTCCAATACGTTCAGCCCCAGCAAGGCAGAAGGCGATAATGCGGGCA
CCGCGGGGCCCCCTGGGGGAACCCCTGCAGGGGACAAGGTGGCTTCCTGGGAACTCCGAGTGGAGGGAAAACTGCTGGAT
GATCCTAGCAAACAGAAGAGGAAGTTTTCTTCATTCTTTAAGAGTCTCGTCATTGAGCTGGACAAAGAGTTATATGGGCC
TGACAACCACCTGGTGGAGTGGCACCGGATGCCCACCACCCAGGAGACTGATGGCTTCCAGGTCAAACGGCCTGGAGACC
TCAACGTCAAGTGCACCCTCCTGCTCATGCTAGATCATCAGCCTCCCCAGTACAAGTTGGACCCCCGACTGGCAAGGCTG
CTGGGGGTGCACACACAGACAAGGGCGGCCATCATGCAGGCTCTTTGGCTTTATATCAAACACAACCAACTGCAGGATGG
GCACGAGCGCGAGTACATCAATTGCAACCGTTACTTCCGCCAGATCTTCAGTTGTGGCCGACTTCGTTTCTCTGAGATTC
CCATGAAGCTGGCTGGGTTGCTGCAGCATCCAGACCCCATTGTCATCAACCATGTCATTAGCGTAGACCCTAACGACCAG
AAGAAGACAGCATGTTACGACATTGATGTGGAGGTAGACGACCCACTCAAGGCCCAGATGAGCAATTTTCTGGCCTCTAC
CACCAATCAGCAGGAGATTGCCTCCCTCGATGTCAAGATCCATGAGACCATTGAGTCCATCAACCAGCTGAAGACCCAGA
GGGATTTCATGCTCAGCTTTAGCACGGACCCTCAGGACTTCATCCAGGAATGGCTCCGTTCTCAGCGCCGAGACCTCAAG
ATCATCACTGATGTGATTGGGAATCCTGAGGAGGAGAGACGAGCTGCTTTCTACCACCAGCCCTGGGCCCAGGAAGCAGT
TGGGAGGCACATCTTTGCCAAGGTGCAGCAGCGAAGGCAAGAACTGGAACAGGTGCTGGGAATCCGCTTGACCTAA
ATGTCGGGCCGTGGCGCGGGCGGGTTCCCGCTGCCTCCGCTGAGTCCTGGTGGCGGCGCCGTTGCCGCGGCCCTGGGAGC
GCCGCCTCCGCCCGCGGGACCCGGCATGCTGCCGGGACCGGCGCTCAGGGGGCCAGGGCCGGCTGGCGGCGTGGGGGGCC
CCGGGGCCGCCGCCTTCCGCCCCATGGGCCCCGCGGGCCCCGCGGCGCAGTACCAGCGGCCTGGTATGTCACCGGGGAGC
CGGATGCCCATGGCTGGCTTGCAGGTGGGACCCCCCGCCGGCTCCCCATTTGGCACAGCTGCTCCACTTCGACCTGGCAT
GCCACCCACCATGATGGACCCATTCCGAAAACGCCTGCTGGTGCCCCAGGCCCAGCCCCCAATGCCCGCCCAGCGCCGGG
GGCTAAAGAGGAGGAAGATGGCAGATAAGGTTCTACCTCAGCGAATTCGGGAGCTTGTCCCAGAGTCTCAGGCGTACATG
GATCTCTTGGCTTTTGAGCGGAAGCTGGACCAGACCATTGCCCGAAAGCGGATGGAGATCCAAGAGGCCATCAAAAAGCC
TCTGACGCAAAAACGAAAGCTGCGCATCTATATTTCCAATACGTTCAGCCCCAGCAAGGCAGAAGGCGATAATGCGGGCA
CCGCGGGGCCCCCTGGGGGAACCCCTGCAGGGGACAAGGTGGCTTCCTGGGAACTCCGAGTGGAGGGAAAACTGCTGGAT
GATCCTAGCAAACAGAAGAGGAAGTTTTCTTCATTCTTTAAGAGTCTCGTCATTGAGCTGGACAAAGAGTTATATGGGCC
TGACAACCACCTGGTGGAGTGGCACCGGATGCCCACCACCCAGGAGACTGATGGCTTCCAGGTCAAACGGCCTGGAGACC
TCAACGTCAAGTGCACCCTCCTGCTCATGCTAGATCATCAGCCTCCCCAGTACAAGTTGGACCCCCGACTGGCAAGGCTG
CTGGGGGTGCACACACAGACAAGGGCGGCCATCATGCAGGCTCTTTGGCTTTATATCAAACACAACCAACTGCAGGATGG
GCACGAGCGCGAGTACATCAATTGCAACCGTTACTTCCGCCAGATCTTCAGTTGTGGCCGACTTCGTTTCTCTGAGATTC
CCATGAAGCTGGCTGGGTTGCTGCAGCATCCAGACCCCATTGTCATCAACCATGTCATTAGCGTAGACCCTAACGACCAG
AAGAAGACAGCATGTTACGACATTGATGTGGAGGTAGACGACCCACTCAAGGCCCAGATGAGCAATTTTCTGGCCTCTAC
CACCAATCAGCAGGAGATTGCCTCCCTCGATGTCAAGATCCATGAGACCATTGAGTCCATCAACCAGCTGAAGACCCAGA
GGGATTTCATGCTCAGCTTTAGCACGGACCCTCAGGACTTCATCCAGGAATGGCTCCGTTCTCAGCGCCGAGACCTCAAG
ATCATCACTGATGTGATTGGGAATCCTGAGGAGGAGAGACGAGCTGCTTTCTACCACCAGCCCTGGGCCCAGGAAGCAGT
TGGGAGGCACATCTTTGCCAAGGTGCAGCAGCGAAGGCAAGAACTGGAACAGGTGCTGGGAATCCGCTTGACCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 10 .48 RPM |
| SRP017611_kidney | 33 .94 RPM |
| SRP017611_liver | 60 .04 RPM |
| SRP012049_cerebellum | 36 .20 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000019528 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000014835 | ortholog_one2many | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000013118 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000006988 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_256 | 97.13 | 65.73 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000012708 retrocopies