Parental gene:

SMARCD2, ENSCJAG00000019528

Aliases:None
Description:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Source:HGNC Symbol;Acc:11107]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:82576342..82587450(-)


>ENSCJAG00000019528
ATTCCGGATCGCGGCACCGCGGGACGGGACGGAGCGATGTCGGTCCGAGGCGCGGGCGGAGCTCCCCTAGGCCCTTCCTT
CTGCAGGCAGGACCCTCCTCCCAGCCCAGGTTCTGGCAGGCCTCATTTGCTGGCACAGCTGCCAGGGGCAGGGGGCAGGG
CAGGAGGGATGGAGGGCATGGGCTATGGGTCCCAGAGGGCCCTGCCCCTGACCTATGCATCCCCGTTGGCTCACTTCCCC
CAGCGACCTGGCATGTCACCAGGGAACCGGATGCCCATGGCTGGGTTGCAGGTGGGACCCCCTGCTGGCTCCCCATTTGG
TGCTGCAGCTCCACTTCGACCTGGCATGCCACCTACCATGATGGATCCATTCCGAAAACGCCTGCTTGTGCCCCAGGTGC
AGCCCCCCATGCCTGCCCAGCGCCGGGGGTTAAAGAGGAGGAAGATGGCAGATAAGGTTCTACCTCAACGAATCCGGGAG
CTTGTCCCAGAGTCTCAGGCCTACATGGATCTCTTGGCTTTTGAGCGGAAGCTGGACCAGACCATTGCTCGCAAACGAAT
GGAGATCCAGGAGGCCATCAAAAAGCCTCTGACGCAAAAGCGAAAGCTTCGGATCTACATTTCCAACACATTCAGTCCCA
GCAAGGCAGAAGGCGACAGTGTAGGAACTGCAGGGACCCCTGGGGGAACCCCAGCAGGGGACAAGGTGGCTTCCTGGGAA
CTCCGAGTGGAAGGAAAACTGCTGGATGATCCTAGCAAACAGAAGAGGAAGTTTTCTTCATTCTTTAAGAGCCTGGTCAT
TGAGCTGGACAAGGAGCTGTATGGGCCTGACAATCACCTGGTGGAGTGGCACCGGATGCCCACCACCCAGGAGACAGATG
GCTTCCAGGTAAAACGGCCTGGAGACCTCAATGTCAAGTGCACCCTCCTGCTCATGCTGGATCATCAGCCTCCCCAATAC
AAATTGGACCCCCGATTGGCGAGACTGCTGGGAGTGCACACACAGACGAGGGCTGCCATCATGCAGGCCCTGTGGCTTTA
CATCAAGCATAACCAGCTGCAGGACGGGCATGAGCGGGAGTACATCAACTGCAACCGCTATTTCCGCCAGATCTTCAGTT
GTGGCCGACTCCGTTTCTCTGAGATTCCCATGAAGCTGGCGGGGTTGCTGCAGCACCCGGACCCCATTGTCATCAATCAT
GTCATTAGTGTGGACCCAAACGACCAGAAGAAGACAGCCTGTTACGACATTGATGTGGAGGTGGATGACCCGCTGAAGGC
CCAGATGAGCAATTTTCTGGCCTCTACCACCAATCAGCAGGAGATTGCCTCCCTTGATGTCAAGATCCATGAGACCATTG
AGTCCATCAACCAGCTAAAGACCCAGAGGGATTTCATGCTCAGCTTTAGCACCGACCCCCAGGACTTCATTCAGGAATGG
CTCCGTTCCCAGCGCCGAGACCTCAAGATCATCACTGATGTGATTGGAAATCCTGAGGAGGAGAGACGAGCTGCTTTCTA
CCACCAGCCCTGGGCCCAGGAAGCAGTAGGCAGGCACATCTTTGCCAAGGTGCAGCAGCGAAGGCAGGAACTGGAACAGG
TGCTAGGAATTCGCCTGACCTAA

Library Parental gene expression (RPM)
SRP051959_spleen 20 .92 RPM
SRP051959_skeletal_muscle 10 .96 RPM
SRP051959_lymph_node 23 .06 RPM
SRP051959_lung 26 .55 RPM
SRP051959_liver 22 .74 RPM
SRP051959_kidney 21 .88 RPM
SRP051959_heart 15 .14 RPM
SRP051959_colon 22 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000012708 ortholog_one2one 1 retrogene
retro_cfam_256,
Mustela putorius furo ENSMPUG00000014835 ortholog_one2many 1 retrogene
retro_mputfur_89,
Sarcophilus harrisii ENSSHAG00000013118 ortholog_one2one 1 retrogene
retro_shar_464,
Tursiops truncatus ENSTTRG00000006988 ortholog_one2one 1 retrogene
retro_ttru_1394,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2323 95.85 80.21
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Download FASTA sequences of all ENSCJAG00000019528 retrocopies