Parental gene: | PECR, ENSCAFG00000014368 |
| Aliases: | None |
| Description: | Canis lupus familiaris peroxisomal trans-2-enoyl-CoA reductase (PECR), mRNA. [Source:RefSeq mRNA;Acc:NM_001252139] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 37:23038284..23067357(-) |
>ENSCAFG00000014368
ATGAGGCCGTGGGTCGAGCGCAGGAGCTTCCTGGCTCCCGACTTGCTGCTGCACCAGCTGGCCATCGTCACCGGCGGGGC
CACGGGCATCGGGAAGGCCATCGCCACCGAGCTCCTGCATCTGGGATGTAATGTGGTCATTGCATCTCGTAATTTTGATC
GATTAAAATCTACTGCAGAAGAACTGAGGGCCAGCCTACCCCCGACCAACAAGGCTCAGGTCACTCCCATAAAATGCAAC
ATTCGCAAAGAAGAAGAGGTGAACAATTTGGTCAGATCCACCTTAGAGATTTATGGTAAAATCAATTTTTTGGTAAACAA
TGGAGGAGGCCAGTTCATGGCTGCTATGGAACACATTAATGCAAAGGGATGGCATGCTGTGATTGAAACCAACCTGACAG
GCACCTTCTACATGTGCAAAGCAGTTTACAATTCCTGGATGAAAGAGCATGGAGGATCTATTGTCAATATTATTATCCTT
ACTAGAAATGGATATCCAGGATTTACGCATAGTGGAGCTGCCAGAGCAGGGGTTTACAACCTCACCAAATCCTTAGCTGT
GGAATGGGCCAGCAGTGGAATAAGGATCAACTGTGTTGCCCCTGGAACCATTTATTCCCCGAGTGCTGTTGACAACTATG
GTCCTTTGGCAGAAAACATGTTTGCAGGGTACTTTGAGAAAATCCCAGCTAAGCGAATTGGAGTGCCTGAGGAGATCTCC
TCGGTGGTCTGCTTCCTGCTGTCTCCTGCAGCTTCCTTCATCACTGGACAGTTGGTGAACGTGGACGGGGGCCAGTCTCT
GTATACGCACATATTCGACGTACCAGATCATGACAACTGGCCTGATGGAGCAGGGGACGTTTCCTTTGTCAAACATTTGA
AGAATACTTTCAAGAGTAAAAGCAAGCTCTAA
ATGAGGCCGTGGGTCGAGCGCAGGAGCTTCCTGGCTCCCGACTTGCTGCTGCACCAGCTGGCCATCGTCACCGGCGGGGC
CACGGGCATCGGGAAGGCCATCGCCACCGAGCTCCTGCATCTGGGATGTAATGTGGTCATTGCATCTCGTAATTTTGATC
GATTAAAATCTACTGCAGAAGAACTGAGGGCCAGCCTACCCCCGACCAACAAGGCTCAGGTCACTCCCATAAAATGCAAC
ATTCGCAAAGAAGAAGAGGTGAACAATTTGGTCAGATCCACCTTAGAGATTTATGGTAAAATCAATTTTTTGGTAAACAA
TGGAGGAGGCCAGTTCATGGCTGCTATGGAACACATTAATGCAAAGGGATGGCATGCTGTGATTGAAACCAACCTGACAG
GCACCTTCTACATGTGCAAAGCAGTTTACAATTCCTGGATGAAAGAGCATGGAGGATCTATTGTCAATATTATTATCCTT
ACTAGAAATGGATATCCAGGATTTACGCATAGTGGAGCTGCCAGAGCAGGGGTTTACAACCTCACCAAATCCTTAGCTGT
GGAATGGGCCAGCAGTGGAATAAGGATCAACTGTGTTGCCCCTGGAACCATTTATTCCCCGAGTGCTGTTGACAACTATG
GTCCTTTGGCAGAAAACATGTTTGCAGGGTACTTTGAGAAAATCCCAGCTAAGCGAATTGGAGTGCCTGAGGAGATCTCC
TCGGTGGTCTGCTTCCTGCTGTCTCCTGCAGCTTCCTTCATCACTGGACAGTTGGTGAACGTGGACGGGGGCCAGTCTCT
GTATACGCACATATTCGACGTACCAGATCATGACAACTGGCCTGATGGAGCAGGGGACGTTTCCTTTGTCAAACATTTGA
AGAATACTTTCAAGAGTAAAAGCAAGCTCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 5 .95 RPM |
| SRP017611_kidney | 85 .72 RPM |
| SRP017611_liver | 54 .24 RPM |
| SRP012049_cerebellum | 8 .36 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000005927 | within_species_paralog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000007520 | other_paralog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000016277 | other_paralog | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000001503 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_568 | 97.36 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_1199 | 70.62 | 67.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_1212 | 70.95 | 67.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_1273 | 91.09 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000014368 retrocopies