Parental gene:

TM2D1, ENSCAFG00000018838

Aliases:None
Description:TM2 domain containing 1 [Source:HGNC Symbol;Acc:24142]
Organism:Dog (Canis familiaris)
Coordinates:5:48274901..48310959(+)


>ENSCAFG00000018838
GTCCCCAGCATGGCGGCCGCCTGGCCCTCCGGGCCGGCTGCTCCGGAGGCCGTGGCCGCCCAGCTCCTGGGCGTCCTGTG
GCTCGTGTCAGTCACCACGGGACCTTGGGGAGCGGCTGCCATCGCCGCAGCCGGTGGCGAGGAGACGCTTAAGTGCGAGG
ACCTCAAATTGGGACAATATATTTGTAAAGATCCAAAAATAAATGATGCTACACAAGAACCAGTTAACTGTACAAACTAC
ACAGCTCATGTTCCTTGTTTTCCAGCACCCAACGTAACTTGTAAGGATTTCAGTGGCAATGAAACACATTTTACTGGAAA
TGAAGTTGGTTTTCTGAAGCCTATATCTTGCCGAAACGTAAATGGCTATTCATACAAAGTGGCAGTTGCACTGTCTCTTT
TTCTTGGATGGTTGGGAGCAGATCGATTTTACCTTGGATACCCTGCCTTGGGTTTGTTAAAGTTTTGCACTGTAGGTTTT
TGTGGAATTGGGAGCTTAATTGATTTCATTCTTATTTCAATGCAGATTGTTGGACCTTCAGATGGAAGTAGTTACATTAT
AGATTATTATGGAACCAGACTCACAAGACTGAGTATTACTAATGAGACGTTCAGAAAAACACAGCTATATCCATAA

Library Parental gene expression (RPM)
SRP017611_brain 18 .58 RPM
SRP017611_kidney 22 .78 RPM
SRP017611_liver 4 .71 RPM
SRP012049_cerebellum 15 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011705 ortholog_one2one 1 retrogene
retro_amel_1290,
Choloepus hoffmanni ENSCHOG00000013535 ortholog_one2one 1 retrogene
retro_chof_1494,
Cavia porcellus ENSCPOG00000012287 ortholog_one2one 1 retrogene
retro_cpor_471,
Equus caballus ENSECAG00000015035 ortholog_one2one 1 retrogene
retro_ecab_556,
Erinaceus europaeus ENSEEUG00000001567 ortholog_one2one 1 retrogene
retro_eeur_708,
Loxodonta africana ENSLAFG00000013979 ortholog_one2one 1 retrogene
retro_lafr_662,
Mus musculus ENSMUSG00000028563 ortholog_one2one 2 retrogenes
retro_mmus_1412, retro_mmus_1981,
Rattus norvegicus ENSRNOG00000007527 ortholog_one2one 1 retrogene
retro_rnor_1104,
Tupaia belangeri ENSTBEG00000002089 ortholog_one2one 3 retrogenes
retro_tbel_1156, retro_tbel_1730, retro_tbel_201,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1213 60.90 62.09
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Download FASTA sequences of all ENSCAFG00000018838 retrocopies