RetrogeneDB ID: | retro_eeur_708 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_98226:447..838(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TM2D1 | ||
Ensembl ID: | ENSEEUG00000001567 | ||
Aliases: | None | ||
Description: | TM2 domain containing 1 [Source:HGNC Symbol;Acc:24142] |
Percent Identity: | 88.55 % |
Parental protein coverage: | 59.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | NCTNYTAHVACLPAPNIICKDYGGNETHFTGKEVGFYKPIPCRNVNGYSYKVAVALSLFLGWLGADRFYL |
NCTNYTAHV.CLPAPNI.CKDYGGN.T.FTG.EVGFYKPIPC.NVNG.SYKVAVALSLFL.WLGADRFYL | |
Retrocopy | NCTNYTAHVPCLPAPNITCKDYGGNKTYFTGNEVGFYKPIPCQNVNGHSYKVAVALSLFLAWLGADRFYL |
Parental | GYPA-LG-LLKFCTVGFCGIGSLIDFILISMQIVGPSDGSSYIIDYYGTRLIRLSITNETF |
GYPA.LG.LLKF.TVGFCGIGSLIDFILISMQIVGPSD.SSYII.YY.TRLIRL.ITNETF | |
Retrocopy | GYPAFLG>LLKFFTVGFCGIGSLIDFILISMQIVGPSDESSYIINYYETRLIRLNITNETF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .25 RPM |
SRP017611_liver | 0 .00 RPM | 8 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011705 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000018838 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013535 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012287 | 1 retrocopy | |
Equus caballus | ENSECAG00000015035 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000001567 | 1 retrocopy |
retro_eeur_708 ,
|
Loxodonta africana | ENSLAFG00000013979 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028563 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000007527 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002089 | 3 retrocopies |