Parental gene:

PDLIM1, ENSCAFG00000028553

Aliases:None
Description:PDZ and LIM domain 1 [Source:HGNC Symbol;Acc:2067]
Organism:Dog (Canis familiaris)
Coordinates:28:8770734..8801180(-)


>ENSCAFG00000028553
ATGACACACCTGGAAGCTCAGAACAAAATCAAGGGCTGCACGGACAACATGACCCTCACAGTCACCAGATCTGAACAAAA
AATCTGGTCTCCCCTGGTGACAGAGGAAGGGAAACGTCATCCGTACAAGATGAATTTGGCCTCGGAACCCCAAGAGGTCC
TGCACATAGGAAGCGCCCACAACCGGAGTGCCATGCCCTTTACCGCCTCGCCGGCCTCCAGCTCTGCCCCCAGGGTCATC
ACAAACCAGTACAACAACCCAGCTGGCCTCTATTCCTCTGAAAACATATCCAACTTCAACAACGCCTTGGAGTCAAAGAC
AGCAGCCAGTGGGCAGGAGACAAATGGCAGAGCCTTAGACCATTCTCAGCCTCCAAGTGGACTTGTCATCGACAAAGAAT
CTGAAGTTTACAAGATGCTTCAAGAGAAACAGGAGTTAAATGAGCCCCCCAAGCAATCCACTTCATTCCTGGTATTGCAG
GAAATCTTAGAGTCTGAGGAGAAAGGGGATCCCAACAAGCCATCAGGTTTCAGAAGTGTTAAGGCTCCGGTCACCAAAGT
GGCTGCGTCTATTGGAAACGCCCAGAAGTTGCCCATGTGTGACAAATGTGGCACCGGCATTGTCGGCGTGTTCGTGAAGC
TCCGGGACCGCCACCGTCACCCTGAGTGTTATGTGTGCACTGACTGTGGCACAAATCTGAAACAGAAGGGCCACTTCTTC
GTAGAGGATCAGATCTATTGTGAAAAGCACGCCCGGGAGCGGGTCACACCCCCTGAAGGCTACGACGTGGTCACAGTGTT
CCCCAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 16 .59 RPM
SRP017611_kidney 13 .27 RPM
SRP017611_liver 36 .76 RPM
SRP012049_cerebellum 79 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011182 ortholog_one2one 1 retrogene
retro_btau_690,
Dasypus novemcinctus ENSDNOG00000012381 ortholog_one2one 1 retrogene
retro_dnov_1119,
Homo sapiens ENSG00000107438 ortholog_one2one 2 retrogenes
retro_hsap_1815, retro_hsap_2681,
Macaca mulatta ENSMMUG00000000454 ortholog_one2many 2 retrogenes
retro_mmul_1250, retro_mmul_1419,
Mus musculus ENSMUSG00000055044 ortholog_one2one 2 retrogenes
retro_mmus_2558, retro_mmus_779,
Nomascus leucogenys ENSNLEG00000013055 ortholog_one2one 3 retrogenes
retro_nleu_1819, retro_nleu_2767, retro_nleu_2970,
Oryctolagus cuniculus ENSOCUG00000013643 ortholog_one2one 1 retrogene
retro_ocun_417,
Pongo abelii ENSPPYG00000002507 ortholog_one2one 2 retrogenes
retro_pabe_1109, retro_pabe_1485,
Pan troglodytes ENSPTRG00000002783 ortholog_one2one 1 retrogene
retro_ptro_912,
Tarsius syrichta ENSTSYG00000000834 ortholog_one2one 2 retrogenes
retro_tsyr_1056, retro_tsyr_1224,
Tursiops truncatus ENSTTRG00000012118 ortholog_one2one 2 retrogenes
retro_ttru_1777, retro_ttru_976,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_2080 91.85 100.00
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Download FASTA sequences of all ENSCAFG00000028553 retrocopies