Parental gene:

PDLIM1, ENSDNOG00000012381

Aliases:None
Description:PDZ and LIM domain 1 [Source:HGNC Symbol;Acc:2067]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_1593:2749..66582(-)


>ENSDNOG00000012381
ATGACCACCCAGCAGATAGTCCTCCAGGGCCCGGGGCCGTGGGGCTTCCGCCTCGTGGGGGGCAAAGACTTCGAGCAGCC
TCTCGCCATTTCCCGGGTCACTCCCGGAAGCAAGGCTGCTATAGCTAATTTATGTATCGGAGATGTGATCACAGCCATTG
ATGGGGAAAATACTAGCCATATGACACACTTGGAAGCACAGAATAAAATCAAGGGTTGCACAGACAGCATGACTCTCACG
GTAGCCAGACCTGAACATAAGATATGGTCTCCTCTGGCGACCGAGGAAGGGAAGCGTCATCCATACAAGATGAATTTAGC
TTCTGAACCCCAAGAAGTCCTCCACATCGGAAGTGCCCATAACCGAAGCGCCATGCCCTTTACTGCGTCACCCGCCTCCA
GTACTGCCCCCAGGGTCATCACAAACCAGTACAATAACCCAGCTGGCCTCTACTCTTCTGAAAACATTTCCAACTTCAAC
AGCGCCATAGAGTCAAAGACGGCAGCAAGCGGGGAGGAGACCACTGGCAGACCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCCCAACAAGCCCTCAGGATTCAGAAGTGTT
AAGGCTCCAGTCACCAAAGTGGCTGCATCGATTGGAAATGCTCAGAAACTGCCCATGTGTGACAAATGTGGCACTGGCAT
CGTCGGCGTCTTTGTGAAGCTCCGGGACTGTCACCGCCACCCTGAGTGTTATGTGTGCACCGACTGTGGCACTAACCTGA
AACAGAAGGGCCATTTCTTTGTGGAGGATCAAATCTACTGTGAGAAGCATGCCCGAGAGAGGGTCACGCCCCCTGAGGGC
TACGACGTGGTCACCGTGTTCCCCAAATGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 218 .78 RPM
SRP012922_cerebellum 59 .80 RPM
SRP012922_heart 168 .45 RPM
SRP012922_kidney 14 .51 RPM
SRP012922_liver 95 .21 RPM
SRP012922_lung 168 .00 RPM
SRP012922_quadricep_muscle 187 .97 RPM
SRP012922_spleen 108 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011182 ortholog_one2one 1 retrogene
retro_btau_690,
Canis familiaris ENSCAFG00000028553 ortholog_one2one 1 retrogene
retro_cfam_2080,
Homo sapiens ENSG00000107438 ortholog_one2one 2 retrogenes
retro_hsap_1815, retro_hsap_2681,
Macaca mulatta ENSMMUG00000000454 ortholog_one2many 2 retrogenes
retro_mmul_1250, retro_mmul_1419,
Mus musculus ENSMUSG00000055044 ortholog_one2one 2 retrogenes
retro_mmus_2558, retro_mmus_779,
Nomascus leucogenys ENSNLEG00000013055 ortholog_one2one 3 retrogenes
retro_nleu_1819, retro_nleu_2767, retro_nleu_2970,
Oryctolagus cuniculus ENSOCUG00000013643 ortholog_one2one 1 retrogene
retro_ocun_417,
Pongo abelii ENSPPYG00000002507 ortholog_one2one 2 retrogenes
retro_pabe_1109, retro_pabe_1485,
Pan troglodytes ENSPTRG00000002783 ortholog_one2one 1 retrogene
retro_ptro_912,
Tarsius syrichta ENSTSYG00000000834 ortholog_one2one 2 retrogenes
retro_tsyr_1056, retro_tsyr_1224,
Tursiops truncatus ENSTTRG00000012118 ortholog_one2one 2 retrogenes
retro_ttru_1777, retro_ttru_976,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1119 83.53 51.06
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Download FASTA sequences of all ENSDNOG00000012381 retrocopies