Parental gene:

YAP1, ENSCJAG00000000627

Aliases:None
Description:Yes-associated protein 1 [Source:HGNC Symbol;Acc:16262]
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:35044826..35163718(-)


>ENSCJAG00000000627
ATGGATCCTGGGCAGCAGCCGCCGCCTCAAGCGGCCCCCCAGGGCCAAGGGCAGCCGCCTGCGCAGCCTCAAGGGCAGGG
CCCGTCGTCCGCACCCGGGCAGCCGGCACCCGCGGCGACCCAGGCGGCGTCACAGGCACCCCCCGCCGGGCATCAGATCG
TGCACGTCCGCGGGGACTCAGAGACCGACTTGGAGGCGCTCTTCAACGCCGTCATGAACCCCAAGACGGCCAACGTGCCC
CAGACAGTGCCCATGAGGCTCCGGAAGCTGCCCGACTCCTTCTTCAAGCCTCCTGAGCCTAAATCCCACTCCCGACAGGC
CAGTACTGATGCAGGCACTGCAGGAGCCCTGACTCCACAGCATGTTCGAGCTCATTCCTCTCCAGCTTCTCTGCAGTTGG
GAGCTGTTTCTCCTGGGACACTGACCCCCACTGGAGTAGTGTCTGGCCCAGCAGCTACACCCACAGCGCAGCATCTTCGA
CAGTCTTCTTTTGAGATACCTGATGATGTACCTCTGCCAGCAGGTTGGGAGATGGCAAAGACATCTTCTGGTCAAAGATA
CTTCTTAAATCACATCGATCAGACAACAACATGGCAGGACCCCAGGAAGGCCATGCTGTCCCAGATGAACGTTACAGCCC
CCACCAGTCCACCTGTGCAGCAGAATATGATGAATTCAGCCTCAGGTCCTCTTCCTGATGGATGGGAACAAGCCATGACT
CAGGATGGAGAAATTTACTATATAAACCATAAGAACAAGACCACCTCTTGGCTAGACCCAAGGCTTGACCCTCGTTTTGC
CATGAACCAGAGAATCAGTCAGAGTGCTCCAGTGAAACAGCCACCACCTCTGGCTCCCCAGAGCCCACAGGGAGGTGTCA
TGGGTGGCAGCAGCTCCAACCAACAGCAACAGATGCGACTGCAGCAACTGCAGATGGAGAAGGAGAGGCTGCGGCTGAAA
CAGCAAGAACTGCTTCGGCAGGCAATGCGGAATATCAATCCCAGCACAGCAAATTCTCCAAAATGTCAGGAGTTAGCACT
GCGTAGCCAGTTACCAACACTGGAGCAGGACGGCGGGACTCAAAATCCAGTGTCTTCTCCCGGGATGTCTCAGGAATTGA
GAACAATGACGACCAATAGCTCAGATCCTTTCCTGAACAGTGGCACCTATCACTCTCGAGATGAGAGTACTGACAGTGGA
CTAAGCATGAGCAGCTACAGTGTCCCTCGTACCCCAGATGACTTCCTGAACAGCGTTGATGAGATGGATACAGGTGATAC
TATCAACCAAAGCACCCTGCCCTCACAGCAGAACCGTTTCCCAGACTACCTTGAAGCCATTCCTGGGACAAATGTGGACC
TTGGAACACTGGAAGGAGATGGAATGAACATAGAAGGAGAGGAGTTGATGCCAAGTCTGCAGGAAGCTTTGAGTTCTGAC
ATCCTTAATGACATGGAGTCTGTTTTGGCTGCCACCAAGCTAGATAAAGAAAGCTTTCTTACATGGTTATAG

Library Parental gene expression (RPM)
SRP051959_colon 23 .78 RPM
SRP051959_heart 37 .76 RPM
SRP051959_kidney 28 .22 RPM
SRP051959_liver 12 .11 RPM
SRP051959_lung 34 .08 RPM
SRP051959_lymph_node 6 .28 RPM
SRP051959_skeletal_muscle 16 .01 RPM
SRP051959_spleen 22 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001095 possible_ortholog 2 retrogenes
retro_chof_1687, retro_chof_407,
Homo sapiens ENSG00000137693 ortholog_one2one 1 retrogene
retro_hsap_3531,
Otolemur garnettii ENSOGAG00000002885 ortholog_one2one 2 retrogenes
retro_ogar_1565, retro_ogar_3345,
Pan troglodytes ENSPTRG00000004211 ortholog_one2one 1 retrogene
retro_ptro_2399,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_4112 67.83 52.16
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Download FASTA sequences of all ENSCJAG00000000627 retrocopies