Parental gene: | ENSCJAG00000008172 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 14:83156976..83269677(+) |
>ENSCJAG00000008172
CCGCCCGCCATGCCCTCCAGCGGCCCCGGGGACATCAGCAGCTCTGCTGTGGAGCGGGAGGAGGACCGAAAGGATGGAGA
GGAGCAGGAGGAGCCTCGTGGCAAAGAGGAGCGCCAAGAGCCCAGCACCACGGCCCGGAAGGTGGGGCGGCCTGGGAGGA
AGCGCAAGCACCCCCCGGTGGAAAGCAGTGACACACCAAAGGACCCTGCGGTGACCTCCAAGACCCCATCCATGGCCCAG
GACTCAGGCCCCTCAGAGCTGTTACCCAACGGGGACTTGGAGAAGCGGAGTGAGCCACAGCCAGAGGAGGGGACCCCTGC
TGGGGGGCAGAAGGGCGGGTCCCCAGCAGAGGGAGAGGGTGCAGCTGAGACCCCGCCAGAAGCCTCCAGAGCAGTGGAGA
ATGGCTGCTGCACCCCCAAGGAGGGACGAGGAGCCCCTGCAGAAGAGGGCAAAGAACAGAAGGAGACCAACATCGAAACC
ATGAAAATGGAGGGCTCCCGGGGCCGGCTGCGGGGTGGCTTGGGCTGGGAGTCCAGCCTCCGTCAGCGGCCCATGCCACG
GCTCACCTTCCAGGCAGGGGATCCATACTACATCAGCAAGCGCAAGCGGGACGAGTGGCTGGCACGCTGGAAAAGGGAGG
CTGAGAAGAAAGCCAAGGTCATTGCAGTAATGAATGCTGTGGAAGAAAACCAGGGTTCTGGGGAGTCTCAGAAGGTGGAG
GAGGCCAGCCCTCCTGCTGTGCAGCAGCCCACTGACCCTGCATCCCCCACTGTGGCCACCACACCAGAGCCCGTGGGGGC
TGATGCTGGGGACAAGAATGCCACCAAAGCAGGCGATGATGAGCCAGAGTACGAGGACGGCCGGGGCTTTGGCATTGGGG
AGCTGGTGTGGGGGAAACTGCGGGGCTTCTCCTGGTGGCCAGGCCGCATTGTGTCTTGGTGGATGACGGGCCGGAGCCGA
GCAGCTGAAGGCACCCGCTGGGTCATGTGGTTCGGAGACGGCAAGTTCTCAGTGGTGTGTGTTGAGAAGCTGATGCCGCT
GAGCTCGTTTTGCAGTGCGTTCCACCAGGCCACATACAACAAGCAGCCCATGTACCGCAAAGCCATCTATGAGGTCCTGC
AGGTGGCCAGCAGCCGTGCGGGGAAGCTGTTCCCAGTGTGCCACGACAGCGACGAGAGTGACACTGCCAAGGCTGTGGAG
GTGCAGAACAAGCAGATGATTGAATGGGCCCTGGGGGGCTTCCAGCCCTCTGGTCCCAAGGGCCTGGAGCCACCAGAAGA
GGAAAAGAATCCCTACAAAGAAGTGTACACGGACATGTGGGTAGAACCTGAGGCAGCTGCCTACGCACCACCTCCACCAG
CCAAAAAGCCCCGGAAGAGCACAACAGAGAAGCCCAAGGTCAAGGAGATCATCGATGAGCGCACAAGAGAGCGGCTGGTG
TACGAGGTGCGGCAGAAGTGCCGGAACATCGAGGACATCTGCATCTCCTGTGGGAGCCTCAACGTCACCCTGGAACACCC
CCTCTTCATTGGAGGAATGTGCCAAAACTGCAAGAACTGCTTTCTGGAGTGTGCATACCAGTACGACGACGATGGCTATC
AGTCCTACTGCACCATCTGCTGCGGGGGCCGAGAGGTGCTCATGTGTGGGAACAACAACTGCTGCAGGTGCTTTTGTGTG
GAATGTGTGGACCTCTTGGTGGGGCCGGGGGCTGCCCAGGCAGCCATTAAGGAAGACCCCTGGAACTGCTACATGTGTGG
GCACAAGGGCACCTACGGGCTGCTGCGGCGGCGAGACGACTGGCCCTCCCGGCTCCAGATGTTCTTTGCTAATAACCACG
ACCAGGAATTTGACCCTCCAAAGGTTTACCCACCTGTCCCAGCTGAGAAGAGGAAGCCCATCCGGGTGCTGTCTCTCTTT
GATGGAATTGCTACAGGGCTCCTGGTGCTGAAGGACTTGGGCATTCAGGTGGACCGCTACATTGCCTCGGAGGTGTGTGA
GGACTCCATCACGGTGGGCATGGTGCGGCACCAGGGGAAGATCATGTACGTCGGGGACGTCCGCAGCGTCACACAGAAGC
ATATCCAGGAGTGGGGCCCATTCGATCTTGTGATTGGGGGCAGTCCCTGCAATGACCTCTCCATTGTCAACCCTGCTCGC
AAGGGCCTCTACGAGGGCACTGGCCGGCTCTTCTTTGAGTTCTACCGCCTCCTGCATGATGCGCGGCCCAAGGAGGGAGA
TGACCGCCCCTTCTTCTGGCTCTTTGAGAATGTGGTGGCCATGGGCGTTAGTGACAAGAGGGACATCTCGCGATTTCTCG
AGTCCAACCCTGTGATGATTGATGCCAAAGAAGTGTCAGCTGCACACAGGGCCCGCTACTTCTGGGGTAACCTTCCCGGT
ATGAACAGGCCGTTGGCATCCACTGTGAATGATAAGCTGGAGCTGCAGGAGTGTCTGGAGCATGGAAGGATAGCCAAGTT
CAGCAAAGTGAGGACCATTACTACAAGGTCAAACTCCATAAAGCAAGGCAAAGACCAGCATTTCCCCGTCTTCATGAATG
AGAAAGAGGACATCCTATGGTGCACTGAAATGGAAAGGGTATTTGGTTTCCCTGTCCACTATACTGACGTCTCTAACATG
AGCCGCTTGGCGAGGCAGAGACTGCTGGGCCGGTCGTGGAGCGTGCCAGTCATCCGCCACCTCTTCGCTCCGCTGAAGGA
GTATTTTGCGTGTGTGTAA
CCGCCCGCCATGCCCTCCAGCGGCCCCGGGGACATCAGCAGCTCTGCTGTGGAGCGGGAGGAGGACCGAAAGGATGGAGA
GGAGCAGGAGGAGCCTCGTGGCAAAGAGGAGCGCCAAGAGCCCAGCACCACGGCCCGGAAGGTGGGGCGGCCTGGGAGGA
AGCGCAAGCACCCCCCGGTGGAAAGCAGTGACACACCAAAGGACCCTGCGGTGACCTCCAAGACCCCATCCATGGCCCAG
GACTCAGGCCCCTCAGAGCTGTTACCCAACGGGGACTTGGAGAAGCGGAGTGAGCCACAGCCAGAGGAGGGGACCCCTGC
TGGGGGGCAGAAGGGCGGGTCCCCAGCAGAGGGAGAGGGTGCAGCTGAGACCCCGCCAGAAGCCTCCAGAGCAGTGGAGA
ATGGCTGCTGCACCCCCAAGGAGGGACGAGGAGCCCCTGCAGAAGAGGGCAAAGAACAGAAGGAGACCAACATCGAAACC
ATGAAAATGGAGGGCTCCCGGGGCCGGCTGCGGGGTGGCTTGGGCTGGGAGTCCAGCCTCCGTCAGCGGCCCATGCCACG
GCTCACCTTCCAGGCAGGGGATCCATACTACATCAGCAAGCGCAAGCGGGACGAGTGGCTGGCACGCTGGAAAAGGGAGG
CTGAGAAGAAAGCCAAGGTCATTGCAGTAATGAATGCTGTGGAAGAAAACCAGGGTTCTGGGGAGTCTCAGAAGGTGGAG
GAGGCCAGCCCTCCTGCTGTGCAGCAGCCCACTGACCCTGCATCCCCCACTGTGGCCACCACACCAGAGCCCGTGGGGGC
TGATGCTGGGGACAAGAATGCCACCAAAGCAGGCGATGATGAGCCAGAGTACGAGGACGGCCGGGGCTTTGGCATTGGGG
AGCTGGTGTGGGGGAAACTGCGGGGCTTCTCCTGGTGGCCAGGCCGCATTGTGTCTTGGTGGATGACGGGCCGGAGCCGA
GCAGCTGAAGGCACCCGCTGGGTCATGTGGTTCGGAGACGGCAAGTTCTCAGTGGTGTGTGTTGAGAAGCTGATGCCGCT
GAGCTCGTTTTGCAGTGCGTTCCACCAGGCCACATACAACAAGCAGCCCATGTACCGCAAAGCCATCTATGAGGTCCTGC
AGGTGGCCAGCAGCCGTGCGGGGAAGCTGTTCCCAGTGTGCCACGACAGCGACGAGAGTGACACTGCCAAGGCTGTGGAG
GTGCAGAACAAGCAGATGATTGAATGGGCCCTGGGGGGCTTCCAGCCCTCTGGTCCCAAGGGCCTGGAGCCACCAGAAGA
GGAAAAGAATCCCTACAAAGAAGTGTACACGGACATGTGGGTAGAACCTGAGGCAGCTGCCTACGCACCACCTCCACCAG
CCAAAAAGCCCCGGAAGAGCACAACAGAGAAGCCCAAGGTCAAGGAGATCATCGATGAGCGCACAAGAGAGCGGCTGGTG
TACGAGGTGCGGCAGAAGTGCCGGAACATCGAGGACATCTGCATCTCCTGTGGGAGCCTCAACGTCACCCTGGAACACCC
CCTCTTCATTGGAGGAATGTGCCAAAACTGCAAGAACTGCTTTCTGGAGTGTGCATACCAGTACGACGACGATGGCTATC
AGTCCTACTGCACCATCTGCTGCGGGGGCCGAGAGGTGCTCATGTGTGGGAACAACAACTGCTGCAGGTGCTTTTGTGTG
GAATGTGTGGACCTCTTGGTGGGGCCGGGGGCTGCCCAGGCAGCCATTAAGGAAGACCCCTGGAACTGCTACATGTGTGG
GCACAAGGGCACCTACGGGCTGCTGCGGCGGCGAGACGACTGGCCCTCCCGGCTCCAGATGTTCTTTGCTAATAACCACG
ACCAGGAATTTGACCCTCCAAAGGTTTACCCACCTGTCCCAGCTGAGAAGAGGAAGCCCATCCGGGTGCTGTCTCTCTTT
GATGGAATTGCTACAGGGCTCCTGGTGCTGAAGGACTTGGGCATTCAGGTGGACCGCTACATTGCCTCGGAGGTGTGTGA
GGACTCCATCACGGTGGGCATGGTGCGGCACCAGGGGAAGATCATGTACGTCGGGGACGTCCGCAGCGTCACACAGAAGC
ATATCCAGGAGTGGGGCCCATTCGATCTTGTGATTGGGGGCAGTCCCTGCAATGACCTCTCCATTGTCAACCCTGCTCGC
AAGGGCCTCTACGAGGGCACTGGCCGGCTCTTCTTTGAGTTCTACCGCCTCCTGCATGATGCGCGGCCCAAGGAGGGAGA
TGACCGCCCCTTCTTCTGGCTCTTTGAGAATGTGGTGGCCATGGGCGTTAGTGACAAGAGGGACATCTCGCGATTTCTCG
AGTCCAACCCTGTGATGATTGATGCCAAAGAAGTGTCAGCTGCACACAGGGCCCGCTACTTCTGGGGTAACCTTCCCGGT
ATGAACAGGCCGTTGGCATCCACTGTGAATGATAAGCTGGAGCTGCAGGAGTGTCTGGAGCATGGAAGGATAGCCAAGTT
CAGCAAAGTGAGGACCATTACTACAAGGTCAAACTCCATAAAGCAAGGCAAAGACCAGCATTTCCCCGTCTTCATGAATG
AGAAAGAGGACATCCTATGGTGCACTGAAATGGAAAGGGTATTTGGTTTCCCTGTCCACTATACTGACGTCTCTAACATG
AGCCGCTTGGCGAGGCAGAGACTGCTGGGCCGGTCGTGGAGCGTGCCAGTCATCCGCCACCTCTTCGCTCCGCTGAAGGA
GTATTTTGCGTGTGTGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 24 .77 RPM |
| SRP051959_skeletal_muscle | 20 .03 RPM |
| SRP051959_lymph_node | 21 .51 RPM |
| SRP051959_lung | 16 .79 RPM |
| SRP051959_liver | 10 .87 RPM |
| SRP051959_kidney | 21 .88 RPM |
| SRP051959_heart | 17 .58 RPM |
| SRP051959_colon | 10 .61 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Microcebus murinus | ENSMICG00000004108 | ortholog_one2many | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000015850 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000024688 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_899 | 88.60 | 66.23 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_4163 | 93.71 | 96.68 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000008172 retrocopies