Parental gene:

PSIP1, ENSCJAG00000012471

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:117339191..117387364(-)


>ENSCJAG00000012471
ATGACTCGCGATTTCAAACCTGGAGACCTCATCTTCGCCAAGATGAAAGGTTATCCCCATTGGCCAGCCCGAGTAGATGA
AGTTCCTGATGGAGCTGTAAAGCCACCTACAAACAAACTACCCATTTTCTTTTTTGGAACCCATGAGACTGCCTTTTTAG
GACCAAAGGATATATTTCCTTACTCAGAAAATAAGGAAAAGTATGGCAAACCAAATAAAAGAAAAGGTTTTAATGAAGGT
TTATGGGAGATAGATAACAATCCAAAAGTGAAATTTTCAAGTCAACAGGCAGCAACTAAACAATCAAATGCGTCATCTGA
TGTTGAAGTTGAAGAAAAAGAAACCAGTGTTTCAAAGGAAGATACCGACCATGAGGAAAAGGCCAGTAATGAGGATATGA
CTAAAGCAGTCGATATAACTACTCCAAAAGCTGCCAGAAGAGGGAGAAAGAGAAAGGCAGAAAAACAAGTAGAAACTGAG
GAGGCAGGAGTAGTGACAACAGCAACAGCATCTGTTAATCTAAAAGTGAGTCCTAAAAGAGGACGACCTGCAGCTACAGA
AGTCAAGATTCCAAAACCAAGAGGCAGACCCAAAGTGGTTAAACAGCCCTGTCCTTCAGAGAGTGACATCATTACTGAAG
AGGATAAAAGTAAGAAAAAGGGGCAAGAGGAAAAACAACCTAAAAAGCAGTTTAAGAAGGAAGAAGAGGGCCAGAAGGAA
GAAGATAAACCAAGAAAAGAACCAGACAAAAAAGAGGGGAAGAAAGAAGTTGAATCAAAAAGGAAAAATTTAGCTAAAAC
AGGGGTTACATCAACCTCCGATTCTGAAGAAGAAGGAGATGATCAAGAAGGTGAAAAGAAGAGAAAAGGTGGGAGGAACT
TTCAGGCTGCTCACAGAAGGAATATGCTAAAAGGCCAACATGAGAAAGAAGCAGCAGATCGAAAACGCAAGCAAGAGGAA
CAAATGGAAACTGAGCAGCAGAATAAAGATGAAGGAAAGAAGCCAGAAGTTAAGAAAGTGGAGAAGAAGCGAGAAACATC
AATGGATTCTCGACTTCAAAGGATACATGCTGAGATTAAAAATTCACTCAAAATTGATAATCTTGATGTGAACAGATGCA
TTGAGGCCTTGGATGAACTTGCTTCACTGCAGGTCACAATGCAACAAGCTCAGAAACACACAGAGATGATTACTACACTG
AAAAAAATACGGCGATTCAAAGTTAGTCAGGTTATCATGGAAAAGTCTACAATGTTGTATAACAAGTTTAAGAACATGTT
TTTGGTTGGTGAAGGAGATTCCGTGATCACACAAGTGCTGAATAAATCTCTTGCTGAACAAAGACAACATGAGGAAGCGA
ATAAAACCAAAGACCAAGGGAAGAAAGGGCCAAACAAAAAGCTAGAAAAGGAACAAACAGGGTCAAAAACTCTAAATGGA
GGATCTGATGCTCAAGACGGTAATCAGCCACAACATAACGGGGAGAGCAATGAAGACAGCAAAGACAACCATGACACCAG
CACGAAGAAAAAGCCATCCAGTGAAGAGAGAGAGACTGAAATATCTCTGAAGGATTCTACACTAGATAACTAG

Library Parental gene expression (RPM)
SRP051959_colon 30 .20 RPM
SRP051959_heart 45 .83 RPM
SRP051959_kidney 38 .05 RPM
SRP051959_liver 20 .21 RPM
SRP051959_lung 57 .68 RPM
SRP051959_lymph_node 70 .89 RPM
SRP051959_skeletal_muscle 27 .10 RPM
SRP051959_spleen 53 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006157 within_species_paralog 2 retrogenes
retro_cjac_338, retro_cjac_4022,
Callithrix jacchus ENSCJAG00000015775 within_species_paralog 1 retrogene
retro_cjac_4165,
Homo sapiens ENSG00000164985 ortholog_one2one 1 retrogene
retro_hsap_4136,
Mus musculus ENSMUSG00000028484 ortholog_one2one 1 retrogene
retro_mmus_2896,
Pan troglodytes ENSPTRG00000020786 ortholog_one2one 1 retrogene
retro_ptro_2811,
Tupaia belangeri ENSTBEG00000000715 ortholog_one2one 1 retrogene
retro_tbel_364,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_4069 76.19 70.57
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Download FASTA sequences of all ENSCJAG00000012471 retrocopies