Parental gene: | KHSRP, ENSCJAG00000016627 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 22:6146244..6156585(-) |
>ENSCJAG00000016627
ATTTTGAGAGCGAAGGAGATCGCTGCCAAAATTGGAGGCGATGCTGCCACGACAGTGAATAACAGCACTCCTGATTTTGG
TTTTGGGGGCCAAAAGAGACAGTTGGAAGATGGAGATCAACCAGAGAGCAAGAAGCTGGCTTCTCAGGGAGACTCAATCA
GTTCTCAACTTGGACCCATCCATCCTCCCCCAAGGACTTCAATGACAGAAGAGTACAGGCCAGACGGCATGGTGGGCCTG
ATCATTGGCAGAGGAGGTGAACAAATTAACAAAATCCAACAGGATTCAGGCTGCAAAGTACAGATTTCTCCAGACAGTGG
TGGCCTACCCGAGCGCAGTGTGTCCTTGACAGGAGCCCCAGAATCTGTCCAGAAAGCGAAGATGATGCTGGACGACATTG
TGTCTCGGGGTCGTGGGGGTCCCCCAGGACAGTTCCATGACAACGCCAATGGGGGCCAGAACGGCACCGTGCAGGAGATC
ATGATCCCTGCGGGCAAGGCCGGCCTCGTCATCGGCAAGGGTGGGGAGACCATTAAGCAGCTACAGGAACGTGCTGGAGT
GAAGATGATCTTAATTCAGGATGGATCTCAGAATACAAATGTGGACAAACCTCTCCGGATCATTGGGGATCCATACAAAG
TGCAGCAAGCCTGTGAGATGGTGATGGACATCCTCCGGGAACGTGACCAAGGCGGCTTTGGGGACCGGAATGAGTATGGA
TCTCGCATTGGCGGGGGCATCGATGTGCCGGTGCCCAGGCATTCTGTCGGCGTGGTCATTGGCCGGAGCGGAGAGATGAT
CAAAAAGATCCAGAATGACGCTGGCGTGCGGATACAGTTCAAGCAAGACGATGGGACAGGGCCCGAGAAGATTGCTCATA
TAATGGGGCCCCCAGACAGGTGCGAGCACGCAGCCCGGATCATCAACGACCTCCTCCAGAGCCTCAGAAGTGGTCCCCCA
GGTCCTCCAGGGGGTCCAGGCATGCCCCCAGGAGGCCGAGGCCGAGGAAGAGGCCAAGGCAACTGGGGCCCCCCTGGTGG
GGAGATGACCTTCTCCATCCCCACTCACAAGTGTGGTCTGGTCATTGGCCGAGGTGGCGAGAACGTGAAAGCCATAAACC
AGCAGACGGGAGCCTTCGTGGAGATCTCCCGGCAGCTGCCACCCAACGGGGACCCCAACTTCAAGTTGTTTATCATCCGG
GGTTCGCCCCAGCAGATCGACCATGCAAAGCAGCTTATCGAGGAGAAGATCGAGGGTCCTCTCTGCCCAGTTGGACCAGG
CCCAGGGGGCCCAGGCCCTGCTGGCCCAATGGGGCCCTTCAACCCTGGACCCTTCAACCAGGGGCCACCCGGGGCTCCCC
CGCATGCCGGGGGACCCCCTCCTCACCAGTACCCACCCCAGGGCTGGGGCAATACTTACCCCCAGTGGCAACCACCTGCT
CCTCATGACCCAAGCAAAGCAGCTGCAGCGGCCGCGGATCCCAATGCCGCATGGGCCGCCTACTACTCACACTACTACCA
GCAGCCCCCAGGCCCCGTCCCTGGCCCTGCGCCGGCCCCCGCGGCCCCACCCGCTCAGGGTGAGCCCCCTCAGCCCCCAC
CCACCGGCCAGTCGGACTACACTAAGGCCTGGGAAGAGTATTACAAAAAGATCGGCCAGCAGCCCCAACAGCCCGGAGCA
CCCCCGCAGCAGGACTACACAAAGGCCTGGGAGGAGTACTACAAGAAGCAGGCGCAAGTGGCCACCGGAGGTGGTCCAGG
AGCTCCCCCAGGCTCCCAGCCAGACTACAGTGCCGCCTGGGCGGAATATTACAGACAGCAGGCCGCTTACTACGGACAGA
CCCCAGGTCCTGGCGGCCCCCAGCCACCGCCCACACAGCAGGGACAGCAGCAGGCTCAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_colon | 13 .58 RPM |
| SRP051959_heart | 12 .91 RPM |
| SRP051959_kidney | 15 .46 RPM |
| SRP051959_liver | 9 .68 RPM |
| SRP051959_lung | 11 .58 RPM |
| SRP051959_lymph_node | 14 .29 RPM |
| SRP051959_skeletal_muscle | 16 .09 RPM |
| SRP051959_spleen | 13 .97 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000020542 | within_species_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000088247 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000005597 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000001952 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000008073 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000010364 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_460 | 75.97 | 67.61 | Please wait, loading  |
Please wait, loading |
Please wait, loading |
Download FASTA sequences of all ENSCJAG00000016627 retrocopies