Parental gene:

ENSCJAG00000017797

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:154036695..154058263(+)


>ENSCJAG00000017797
ATGAAGTCCAATCCCGCTGTCCAGGCTGCCATTGACCTCACAGCGGGGGCTGCAGGGGGCACAGCCTGTGTACTGACCGG
GCAGCCCTTCGACACAATGAAAGTAGCTGGATTGGACAAGCAGGCAAAGCTGAGTGATCTGCAGAATGCAGCTGCTGGTT
CCTTCGCCTCTGCCTTTGCTGCGCTGGTGCTCTGCCCCACAGAGCTCGTGAAGTGCCGGCTGCAGACCATGTACGAGATG
GAGACATCAGGAAAGATAGCCAAAAGCCAGAATACCGTGTGGTCTGTCATCAAGAGTGTCCTTAGGAAGGATGGCCCCCT
GGGCTTCTACCATGGGCTCTCAAGCACTTTACTTCGAGAAGTACCGGGCTATTTCTTCTTCTTCGGTGGCTATGAACTGA
GCCGGTCATTTTTTGCATCAGGGAGATCAAAAGATGAACTAGGCCCTGTGCCTTTGGTGTTAAGTGGTGGAGTTGGTGGG
ATTTGCCTCTGGCTTGCGGTTTACCCAGTGGATTGTATCAAATCCAGAATTCAGGTTCTTTCCATGTCTGGAAAACAGGC
AGGATTTATCAGAACCTTTATAAGTGTGGTGAAGAACGAAGGAATAATGGCCTTATATTCCGGACTAAAACCTACTATGA
TTCGAGCATTCCCTGCTAATGGAGCACTCTTTTTGGCCTACGAATACAGCCGGAAGTTGATGATGAGCCAGTTGGAAGCA
TACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 0 .46 RPM
SRP051959_skeletal_muscle 1 .51 RPM
SRP051959_lymph_node 0 .25 RPM
SRP051959_lung 1 .15 RPM
SRP051959_liver 43 .17 RPM
SRP051959_kidney 0 .69 RPM
SRP051959_heart 0 .82 RPM
SRP051959_colon 3 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000005570 ortholog_many2many 2 retrogenes
retro_cpor_105, retro_cpor_107,
Equus caballus ENSECAG00000007666 possible_ortholog 1 retrogene
retro_ecab_72,
Homo sapiens ENSG00000102743 ortholog_one2many 1 retrogene
retro_hsap_44,
Gorilla gorilla ENSGGOG00000025261 ortholog_one2many 1 retrogene
retro_ggor_2294,
Microcebus murinus ENSMICG00000007218 ortholog_one2many 1 retrogene
retro_mmur_18,
Macaca mulatta ENSMMUG00000022585 ortholog_one2many 1 retrogene
retro_mmul_199,
Nomascus leucogenys ENSNLEG00000001185 ortholog_one2many 1 retrogene
retro_nleu_1704,
Otolemur garnettii ENSOGAG00000009380 ortholog_one2many 1 retrogene
retro_ogar_490,
Pongo abelii ENSPPYG00000005307 ortholog_one2many 1 retrogene
retro_pabe_82,
Pan troglodytes ENSPTRG00000005809 ortholog_one2many 1 retrogene
retro_ptro_2303,
Pteropus vampyrus ENSPVAG00000010393 possible_ortholog 1 retrogene
retro_pvam_15,
Ictidomys tridecemlineatus ENSSTOG00000007840 ortholog_one2many 1 retrogene
retro_itri_726,
Tupaia belangeri ENSTBEG00000017239 ortholog_one2many 1 retrogene
retro_tbel_4583,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1776 85.10 86.31
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Download FASTA sequences of all ENSCJAG00000017797 retrocopies