Parental gene:

LTBP4, ENSCJAG00000037941

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:34014433..34055301(+)


>ENSCJAG00000037941
AGCCCCAGCCCCAGCCAGGTCGTCGAGGTCGCAGGGGTCGCCGGCCGCCTGGCCAGCGTTGCTACTTGTCGCTGCTGCCC
AGGCCAGACGTCTAGGAGGAGCCGCTGCATCCGAGCCTCCTGCAGGGTCCGAAGCTGCCAGCCCAAAAAGTGTGCGGGCC
CCCAGCGGTGCCTGAACCCAGTGCAAGCAGTGAGGAAGAGACAGGTGTCCCTCAACTGGCAGCCACTGACGCTGCAGGAG
GCCAGAGCTCTACTGAGACTACTGAGAAGGAGGCCCCCAGAGCGTGCCCCCGCTGGCAAGGCCCCGGTCCTGTGTCCCTT
GATCTGTCACAATGGTGGTGTGTGCGTGAAGCCTGACCGCTGCCTCTGTCCCCCGGACTTCGCTGGCAAGTTCTGCCAGT
TGCACTCCATGCCAGGCCTCACCCGCTCCGTGTACACTATGCCACTGGCCAACCACCGCGACGACGAGCACGGCGTGGCG
TCTATGGTGAGCGTCCACGTGGAGCACCCGCAGGAGGCATCGGTGGTGGTGCACCAGGTGGAGCGTGTGTCCGGCCCGTG
GGAGGAGGCGGACGCCGCACCCTACACGGTGTTGGCACAAAGTGCGCCACGGGAGGACAGCTACTCAGACGCCTCGGGCT
TCGGTTACTGCTTTCGGGAGCTGCGCGGAGGCGAATGTGCGTCCCCGCTGCCGGGGCTCCGGACGCAGGAGGTCTGCTGC
GGAGGGGCCGGCTTGGCCTGGGGCGTTCACGACTGTCAGCTGTGCTCAGAGCACCAGGGGAACTCTGAAAGAGTGGGCGC
CCCAGATGGACCTTGTCCAACCGGCTTTGAAAGAATTAATGGGTCCTGCGAAGATGTGGATGAGTGCGCGACTGGCGGAC
GTTGCCAGCACGGCGAGTGTGCAAACACGCGCGGCGGTTACACGTGCGTGTGCCCCGACGGCTTTCTGCTCGACTCGTCC
CGCAGCAGCTGCATCTCCCAACACGTGATCTCAGAGGCCAAAGGGCCCTGCTTCCGCGTGCTCCGCGACGGCGGCTGTTC
GCTGCCCATTCTGCGGAACATCACTAAACAGATCTGCTGCTGTAGCCGCGTGGGCAAGGCCTGGGGCCGGGGCTGCCAGC
TCTGCCCACCCTTCGGCTCAGAGGGTTTCCGGGAGATCTGCCCGGCTGGCCCTGGCTACCACTACTCGGCCTCCGACCTC
CGCTACAACACCAGACCCCTGGCCCAGGAGCCACCCCGAGTGTCACTCAGCCAGCCTCGTACCCTGCCAGCCACCTCTCG
GCCTTCTGCAGGCTTTCTGTCCACCCATCGCCCGGGGCCCAGGGCTGACCCCCAGCCCGATCCTCGGCCAGATCCCCGGC
CCGGCCCTGAGCTTCCCTTGCCCAGCATCCCTGCCTGGACTGGTCCTGAGATTGCTGAATCAGGTCCCTCCCCGGGCATG
TGTCAGCGCAACCCCCAGGTCTGCGGCCCAGGACGCTGCATTCCTCAGCCCAGCGGCTACACCTGCGCTTGCGACTCCGG
CTTTCGGCTCAGCCCCCAGGGCACCCGATGCATTGATGTGGACGAATGTCGCCGCCTGCCCCCGCCCTGTGCTTCCGGGC
GCTGCGAGAACTCAGCAGGCAGCTTTCGCTGCGTGTGCGGCCCGTTCCGAGCCGGCCCGCGGGCTACAGAATGCCCGGAC
GTGGACGAGTGCCACCGTGTGCCACCGCCGTGTGACCTCGGGCGCTGCGAGAACACGCCAGGCAGCTTCCTGTGCGTGTG
CCCCGCTGGGTACCAGGCTGTGCCGCACGGAGCCAGCTGCCAGGATGTGGATGAATGCACCCAGAGCCCAGGCCTCTGCG
GCCGAGGGGCCTGTGAGAACCTGCCCGGCTCTTTCCGCTGTGTTTGCCCGGCTGGCTTCCGGGGCTCGGCGTGCGAAGAG
GATGTGGATGAGTGTGCCCAGGAGCCACCGCCCTGTGGGCCCGGCCGCTGTGACAACACGGCAGGCTCCTTTCACTGTGC
CTGCCCAGCTGGCTTCCGCTCCCGAGGGCCTGGGGCCCCCTGCCAAGATGTGGACGAGTGTGCCCGTAGCCCCCCGCCCT
GCACCTATGGCCGGTGTGAGAACACAGAAGGCAGTTACCAGTGTGTCTGCCCCACTGGCTTCCAACCCAACGCTGCTGGC
TCTGAATGCGAGGATGTGGATGAGTGTGAGAACCACCTGGCATGCCCTGGGCAGGAGTGCCCACCAGAATGGATTGCAAG
ACCTGAAAAAAACGGCCACCACCTGCACCGTGGCAGATTAATGACAGATGTAGACGAATGCAGTTCGGGTGCCCCCTGTG
GTCCCCACGGCCACTGCACTAACACGGAAGGCTCCTTCCGCTGCAGCTGCGCGCCAGGCTACAGGGCGCCGTCGGGTCGG
CCGGGGCCCTGCGCAGATGTGAACGAGTGCTTGGAGGGCGACTTCTGCTTCCCTCACGGCGAGTGCCTCAACACCGATGG
CTCCTTTGCCTGTACTTGTGCCCCCGGCTACCGGCCCGGACCCCGCGGAGCCTCTTGCCTCGACGTGGACGAGTGCAGCG
AGGAGGACCTTTGCCAGAGCGGCATCTGTACCAACACCGACGGCTCCTTCGAGTGCATCTGTCCTCCGGGACACCGCGCC
GGCCCGGACCTCGCCTCCTGCCTCGACGTGGACGAATGTCGCGAGCGGGGGCCCCTGTGCGGGTCGCAGCGCTGTGAGAA
ACTCCCGAGAAACTTCCACTGGCTCCTCCGCTGTGATCCCGGGTACCCATACGGGCCCGAGGGCACTGTGACGTCAAATG
TGGATGAGTGCCAAGAATATGGTCCCGAGATTTGCGGAGCCCAGCGTTGTGAGAACACCCCTGGCTCCTACCACTGCACA
CCCGCCTGTGACCCTGGCTATCAGCCCACGCCAGGGGGCGGATGCCAGGATGTGGACGAATGCCGGAACCGGTCCTTCTG
CGGTGCCCACGCCGTGTGCCAGAACCTGCCCGGCTCCTTCCAGTGCCTCTGTGACCAGGGTTACGAGGGGGCGCGGGATG
GGCGTCACTGCGTGGATGTGAATGAGTGTGAAACACTCCAGGGTGTATGTGGAGCTGCTCTGTGTGAAAATGTTGAGGGC
TCCTTCCTCTGTGTCTGCCCCACCAGCCCGGAGGAGTTTGACCCCATGACTGGACGCTGTGTTCCCCCCCGAACTTCTGC
TGGCACATTCCCAGGCTCACAGCCCCAGGCACCTGCCAGCCCCGGTCTGCCGGCCAGGCCACCTCCACCTCGCCGACCCA
GCACACCTAGGCAGGGCCCTGTGGGAAGTGGGCGCCGGGAGTGCTACTTTGACACAGCGGCCCCAGATGCATGTGACAAC
ATCCTGGCTCGGAATGTGACATGGCAGGAGTGCTGCTGTACTGTGGGTGAGGGCTGGGGCAGCGGCTGCCGCATCCAGCA
GTGCCCGGGCACTGAAACAGCTGAGTACCAGTCATTGTGCCCCCACGGCCGGGGCTACCTGGCGCCCAGTGGAGACCCAA
GCCTCCGGAGAGATGTGGACGAATGTCAGCTCTTCCGAGACCAGGTGTGCAAGAGTGGCGTGTGCGTGAACACGGCCCCC
GGCTACTCGTGTTACTGCAGCAACGGTTACTACTACCACACACAGCGGCTGGAGTGCATTGATAATGACGAGTGCTCTGA
TGAGGAGCCGGCCTGTGAGGGTGGCCGCTGCATCAACACTGTGGGCTCTTATCACTGCACCTGCGAGTCCCCGCTGGTAC
TGGACGGCTCGGGGCGCCGCTGCGTCTCCAACGAGAGCCAGAGTCTCGATGACAATCTTGGAGTGTGCTGGCAGGAAGTG
GGGGCTGACCTCGTGTGCAGCCACCCTCGGCTGGATCGTCAAGCCACCTACACAGAGTGCTGCTGCCTGTATGGAGAGGC
CTGGGGCATGGACTGCGCCCTGTGCCCTGCCCAGGACTCAGATGACTTTGAGGCCCTGTGCAATGTGCTACGCCCCCCTG
CATATGGCCCCGTGCGACCAGGTGGCTTTGGACTCCCCTACGAGTATGGCCCAGACTTAGGTCCACCTTACCAGGGCCTC
CCGTATGGACCTGAGTTGTACCCACCACCTGTGCTACCCTACGACCCCTACCCACCACCACCTGGACCCTTTGCCCGCCG
GGAGGCCCCTTACGGGGCACCCCGCTTCGACATGCCAGACTTTGAGGATGATGGTGGCCCCTATGGCGAATCTGAGGCTC
CTGCCCCACCTGGCCCGGGCACGCGCTGGCCCTATCGGTCCCGGGACACCCGCCGCTCCTTCCCAGAACCTGAGGAGCTA
CCTGAAGGTGGCAGCTATGCTGGCACTCCATCTGAGCCCTATGAGGAGCTGGAGGCAGAGGAGTGCGGGATCCTGGACGG
CTGCACTAACGGGCGCTGCGTGCGCGTCCCGGCAGGCTTCACCTGCCGCTGCTTTGATGGCTACCGCTTGGACATGACCC
GCATGGCCTGCGTTGACATCAACGAGTGTGATGAGGCGGCATCCCCGCTGTGCGTCAATGCGCGCTGCCTCAACACGGAT
GGCTCCTTCCGCTGCATCTGTCGCCCGGGATTCGCACCCACACACCAGCCGCACCACTCCTGCTTCTGCGCATGTGCACG
GGGCCGCCCG

Library Parental gene expression (RPM)
SRP051959_spleen 13 .36 RPM
SRP051959_skeletal_muscle 8 .63 RPM
SRP051959_lymph_node 4 .06 RPM
SRP051959_lung 17 .91 RPM
SRP051959_liver 1 .04 RPM
SRP051959_kidney 6 .41 RPM
SRP051959_heart 81 .88 RPM
SRP051959_colon 13 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000017963 other_paralog 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3343 56.84 51.67
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2. retro_cjac_3355 57.73 53.33
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3. retro_cjac_3369 59.24 99.44
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4. retro_cjac_3372 57.86 86.67
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5. retro_cjac_3389 60.82 52.22
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6. retro_cjac_3391 57.89 51.67
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7. retro_cjac_3423 55.79 50.56
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8. retro_cjac_3425 60.42 53.33
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9. retro_cjac_3430 61.86 53.33
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10. retro_cjac_3445 55.43 50.56
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11. retro_cjac_3456 57.99 92.22
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12. retro_cjac_3474 57.95 94.44
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13. retro_cjac_3476 61.46 53.33
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14. retro_cjac_3477 62.50 70.00
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15. retro_cjac_3487 58.88 58.89
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16. retro_cjac_3491 60.87 51.11
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17. retro_cjac_3543 60.42 53.33
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18. retro_cjac_3545 68.13 50.56
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19. retro_cjac_3547 62.24 53.33
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20. retro_cjac_3549 62.24 53.33
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21. retro_cjac_3566 56.80 92.22
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22. retro_cjac_3583 58.58 92.22
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23. retro_cjac_3598 61.46 53.33
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24. retro_cjac_3609 60.14 79.44
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25. retro_cjac_3616 52.46 66.67
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26. retro_cjac_3622 60.36 92.22
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27. retro_cjac_3633 55.24 57.22
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28. retro_cjac_3641 61.86 53.33
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29. retro_cjac_3656 61.86 53.33
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30. retro_cjac_3672 58.33 52.22
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31. retro_cjac_3674 53.27 55.00
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32. retro_cjac_3677 66.67 52.78
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33. retro_cjac_3682 64.89 50.56
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34. retro_cjac_3733 58.76 53.33
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35. retro_cjac_3736 64.52 51.67
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Download FASTA sequences of all ENSCJAG00000037941 retrocopies