Parental gene: | PGGT1B, ENSCPOG00000002443 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_17:28741808..28810541(-) |
>ENSCPOG00000002443
ATGGCGGCCACTGAGGATGAGCGGCTGGTGGGGAGCGGCGAGGGAGAGCGACTAGACTTCTTGCGGGACCGACACGTGCG
GTTTTTCCAGCGCTGCCTTCAGGTTCTGCCAGAGCGTTATTCTTCGCTCGAGACCAGCAGGTTGACAATTGCATTTTTTG
CGCTCTCTGGACTAGATATGTTGGACTCCTTAGATGTGGTGAACAAAGATGATATAATAGAATGGATTTACTCCCTGCAG
GTTCTTCCCACAGAAGACAGATCAAATCTAAATCGCTGTGGCTTCCGAGGCTCTTCGTATCTGGGTATTCCATTCAACCC
ATCAAAGAGTCCTGGCACAGCTCATCCATATGATAGTGGTCACATAGCAATGACCTACACTGGCCTTTCATGTTTAGTTA
TTCTTGGAGATGATTTAAGCCGAGTAAATAAAGAAGCTTGTTTAGCGGGTTTGCGAGCCCTTCAACTGGAAGATGGAAGT
TTCTGTGCAGTACCTGAAGGCAGTGAAAATGACATGCGATTTGTGTACTGTGCTTCCTGTATTTGCTATATGCTCAACGA
CTGGTCAGGCATGGATGTGAAAAAAGCCATCAGCTATATTAGAAGAAGTATGTCCTATGACAATGGGCTGGCACAGGGAG
CTGGACTTGAATCTCATGGAGGATCCACCTTCTGTGGTATTGCATCCCTATGCCTAATGGGTAAACTAGAAGAAGTTTTT
TCAGAAAAAGAACTGAACAGGATAAAGAGGTGGTGTATAATGAGGCAACAAAATGGTTATCACGGAAGACCTAATAAGCC
AGTGGACACCTGTTACTCATTTTGGGTGGGCGCAACTCTGAAGCTTCTGAAAATTTTCCAGTACACTAACTTTGAGAAAA
ATAGAAATTACATCTTATCAACTCAAGATCGCCTTGTAGGAGGCTTTGCCAAATGGCCAGACAGTCATCCAGATGCTTTG
CATGCATACTTCGGGATCTGTGGCCTGTCACTAATGGAGGAAAGTGGGATTTGTAAAGTTCATCCTGCTCTGAATGTAAG
CACACGAACTTCTGAACGCCTTCGTGATCTCCATCAAAGCTGGGAATCCAAGGACTCTAAACAAAGCTCAGAGGATGTCC
ATGACTCCAAATGA
ATGGCGGCCACTGAGGATGAGCGGCTGGTGGGGAGCGGCGAGGGAGAGCGACTAGACTTCTTGCGGGACCGACACGTGCG
GTTTTTCCAGCGCTGCCTTCAGGTTCTGCCAGAGCGTTATTCTTCGCTCGAGACCAGCAGGTTGACAATTGCATTTTTTG
CGCTCTCTGGACTAGATATGTTGGACTCCTTAGATGTGGTGAACAAAGATGATATAATAGAATGGATTTACTCCCTGCAG
GTTCTTCCCACAGAAGACAGATCAAATCTAAATCGCTGTGGCTTCCGAGGCTCTTCGTATCTGGGTATTCCATTCAACCC
ATCAAAGAGTCCTGGCACAGCTCATCCATATGATAGTGGTCACATAGCAATGACCTACACTGGCCTTTCATGTTTAGTTA
TTCTTGGAGATGATTTAAGCCGAGTAAATAAAGAAGCTTGTTTAGCGGGTTTGCGAGCCCTTCAACTGGAAGATGGAAGT
TTCTGTGCAGTACCTGAAGGCAGTGAAAATGACATGCGATTTGTGTACTGTGCTTCCTGTATTTGCTATATGCTCAACGA
CTGGTCAGGCATGGATGTGAAAAAAGCCATCAGCTATATTAGAAGAAGTATGTCCTATGACAATGGGCTGGCACAGGGAG
CTGGACTTGAATCTCATGGAGGATCCACCTTCTGTGGTATTGCATCCCTATGCCTAATGGGTAAACTAGAAGAAGTTTTT
TCAGAAAAAGAACTGAACAGGATAAAGAGGTGGTGTATAATGAGGCAACAAAATGGTTATCACGGAAGACCTAATAAGCC
AGTGGACACCTGTTACTCATTTTGGGTGGGCGCAACTCTGAAGCTTCTGAAAATTTTCCAGTACACTAACTTTGAGAAAA
ATAGAAATTACATCTTATCAACTCAAGATCGCCTTGTAGGAGGCTTTGCCAAATGGCCAGACAGTCATCCAGATGCTTTG
CATGCATACTTCGGGATCTGTGGCCTGTCACTAATGGAGGAAAGTGGGATTTGTAAAGTTCATCCTGCTCTGAATGTAAG
CACACGAACTTCTGAACGCCTTCGTGATCTCCATCAAAGCTGGGAATCCAAGGACTCTAAACAAAGCTCAGAGGATGTCC
ATGACTCCAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 4 .44 RPM |
| SRP017611_kidney | 5 .97 RPM |
| SRP017611_brain | 3 .05 RPM |
| SRP040447_lung | 5 .83 RPM |
| SRP040447_skeletal_muscle | 5 .18 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000016700 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000164219 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000003752 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000015694 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000017146 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_1344 | 84.74 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000002443 retrocopies