Parental gene:

PGGT1B, ENSCPOG00000002443

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_17:28741808..28810541(-)


>ENSCPOG00000002443
ATGGCGGCCACTGAGGATGAGCGGCTGGTGGGGAGCGGCGAGGGAGAGCGACTAGACTTCTTGCGGGACCGACACGTGCG
GTTTTTCCAGCGCTGCCTTCAGGTTCTGCCAGAGCGTTATTCTTCGCTCGAGACCAGCAGGTTGACAATTGCATTTTTTG
CGCTCTCTGGACTAGATATGTTGGACTCCTTAGATGTGGTGAACAAAGATGATATAATAGAATGGATTTACTCCCTGCAG
GTTCTTCCCACAGAAGACAGATCAAATCTAAATCGCTGTGGCTTCCGAGGCTCTTCGTATCTGGGTATTCCATTCAACCC
ATCAAAGAGTCCTGGCACAGCTCATCCATATGATAGTGGTCACATAGCAATGACCTACACTGGCCTTTCATGTTTAGTTA
TTCTTGGAGATGATTTAAGCCGAGTAAATAAAGAAGCTTGTTTAGCGGGTTTGCGAGCCCTTCAACTGGAAGATGGAAGT
TTCTGTGCAGTACCTGAAGGCAGTGAAAATGACATGCGATTTGTGTACTGTGCTTCCTGTATTTGCTATATGCTCAACGA
CTGGTCAGGCATGGATGTGAAAAAAGCCATCAGCTATATTAGAAGAAGTATGTCCTATGACAATGGGCTGGCACAGGGAG
CTGGACTTGAATCTCATGGAGGATCCACCTTCTGTGGTATTGCATCCCTATGCCTAATGGGTAAACTAGAAGAAGTTTTT
TCAGAAAAAGAACTGAACAGGATAAAGAGGTGGTGTATAATGAGGCAACAAAATGGTTATCACGGAAGACCTAATAAGCC
AGTGGACACCTGTTACTCATTTTGGGTGGGCGCAACTCTGAAGCTTCTGAAAATTTTCCAGTACACTAACTTTGAGAAAA
ATAGAAATTACATCTTATCAACTCAAGATCGCCTTGTAGGAGGCTTTGCCAAATGGCCAGACAGTCATCCAGATGCTTTG
CATGCATACTTCGGGATCTGTGGCCTGTCACTAATGGAGGAAAGTGGGATTTGTAAAGTTCATCCTGCTCTGAATGTAAG
CACACGAACTTCTGAACGCCTTCGTGATCTCCATCAAAGCTGGGAATCCAAGGACTCTAAACAAAGCTCAGAGGATGTCC
ATGACTCCAAATGA

Library Parental gene expression (RPM)
SRP017611_brain 3 .05 RPM
SRP017611_kidney 5 .97 RPM
SRP017611_liver 4 .44 RPM
SRP040447_lung 5 .83 RPM
SRP040447_skeletal_muscle 5 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016700 ortholog_one2one 1 retrogene
retro_cjac_1058,
Homo sapiens ENSG00000164219 ortholog_one2one 2 retrogenes
retro_hsap_675, retro_hsap_698,
Loxodonta africana ENSLAFG00000003752 ortholog_one2one 1 retrogene
retro_lafr_668,
Pongo abelii ENSPPYG00000015694 ortholog_one2one 3 retrogenes
retro_pabe_527, retro_pabe_545, retro_pabe_640,
Pan troglodytes ENSPTRG00000017146 ortholog_one2one 2 retrogenes
retro_ptro_444, retro_ptro_487,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1344 84.74 100.00
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Download FASTA sequences of all ENSCPOG00000002443 retrocopies